DC887829

Overview
NameDC887829
Unique NameDC887829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887829_ssr192 microsatellite DC887829_ssr192:192..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12758 contig Csv1_Contig12758:503..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.079e-29
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            RNDPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:  143 RNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.769e-28
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            RNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRNQTLSL RYR
Sbjct:  143 RNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTLSLPRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.017e-28
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            R DPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:  143 RKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.655e-26
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N +LSLRRYR
Sbjct:  143 RNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.824e-26
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N ++SLRRYR
Sbjct:  143 RNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_DICDI (60S ribosomal protein L15 OS=Dictyostelium discoideum GN=rpl15-1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG-HLHHKARPSRRATWKRNQTLSLRRYR 365
            RNDPR NWICKPVHKHRELRGLTSAG K RGLR KG H   K RPSR+A +KR  T+   RYR
Sbjct:  143 RNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRASKTRPSRQANYKRRNTVVFHRYR 205          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.828e-18
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            R DPRINWI  PVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR+ TLSL RYR
Sbjct:  143 RRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRHNTLSLWRYR 203          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            R D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TLSL RYR
Sbjct:  143 RRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTLSLWRYR 203          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:  143 RRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:  143 RRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204          
The following BLAST results are available for this feature:
BLAST of DC887829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL15B_PICMA6.079e-2990.3260S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15_PETHY1.769e-2890.3260S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL15A_PICMA3.017e-2888.7160S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL151_ARATH1.655e-2685.4860S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL152_ARATH2.824e-2683.8760S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL15_DICDI9.727e-1971.4360S ribosomal protein L15 OS=Dictyostelium discoid... [more]
RL15_NEUCR4.828e-1869.3560S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15B_YEAST3.460e-1662.9060S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15_RAT4.519e-1665.0860S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB4.519e-1665.0860S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionDC887829 EIC Citrus sinensis cDNA clone EIC0962 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887829 ID=DC887829; Name=DC887829; organism=Citrus sinensis; type=EST; length=367bp
AAGGATTTATCGGATAAAACAATCCATAGGAATTACAAAATTCAATTGCC
CAAATGAAACAAAATTAACCATGTTGCAGCAAAAACTAACCCAAAACACT
TGTTTCGGAGTTCAAACTCAACAGCAATTAAACTAGGTTGATAATGTGAA
AAACACAAAGTAAACAATACAGAAGTTTAACGGTAACGCCTGAGAGAGAG
AGTTTGGTTCCTCTTCCAGGTTGCCCTTCTTGAAGGTCGTGCCTTGTGGT
GCAAGTGACCCTTTCCTCGGAGACCTCTGTACTTCTTCCCAGCAGAAGTG
AGTCCACGAAGCTCCCTGTGCTTGTGGACAGGCTTACAGATCCAGTTGAT
CCTGGGGTCATTGCGGA
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