DC887816

Overview
NameDC887816
Unique NameDC887816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M2_MOUSE (AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.752e-16
Identity = 42/117 (35.90%), Postives = 73/117 (62.39%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ +I+  Q+P  +L+  LT + GT       K+ +W +G+I   K PSL GTM L+ G       PT  ++F+I  +A+SGL++++LD+     + +KG + +T+AG+++VR+
Sbjct:  302 GKTIEGVIVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M2_HUMAN (AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 41/117 (35.04%), Postives = 72/117 (61.54%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ + +  Q+P  +L+  LT + GT       K+ +W +G+I   K PSL GTM L+ G       PT  ++F+I  +A+SGL++++LD+     + +KG + +T+AG+++VR+
Sbjct:  302 GKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMSLQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M2_RAT (AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 41/117 (35.04%), Postives = 72/117 (61.54%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ + +  Q+P  +L+  LT + GT       K+ +W +G+I   K PSL GTM L+ G       PT  ++F+I  +A+SGL++++LD+     + +KG + +T+AG+++VR+
Sbjct:  302 GKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLPSLKGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_PONAB (AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 39/117 (33.33%), Postives = 71/117 (60.68%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+I   K PSL G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct:  302 GKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_HUMAN (AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 39/117 (33.33%), Postives = 71/117 (60.68%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+I   K PSL G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct:  302 GKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_BOVIN (AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 39/117 (33.33%), Postives = 71/117 (60.68%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+I   K PSL G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct:  302 GKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_CHICK (AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.316e-15
Identity = 34/117 (29.06%), Postives = 72/117 (61.54%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKT++ +++   +P  +L+ +LT+  G+       K+  W +G+I   K P+L G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG + +T+AG+++VR+
Sbjct:  302 GKTVEGVVMTVHMPKAVLNMNLTATQGSYTFDPVTKVLAWDVGKITPQKLPNLKGIVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYITKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_MOUSE (AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.615e-15
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ I +   +P  +L+ +LT   G+       K+  W +G+I   K PSL G + L++G       P   ++F+I  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct:  302 GKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVGKITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M1_RAT (AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.256e-14
Identity = 37/117 (31.62%), Postives = 69/117 (58.97%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GKTI+ I +   +P  +L+ +LT   G+       K+  W +G+I   K PSL G + L++G       P   ++F+I  +A+SGL++++LD+     + +KG + +T+AG+++VR+
Sbjct:  302 GKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVGKITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYITKAGKFQVRT 418          
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP1M_DISOM (AP-1 complex subunit mu OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 38/117 (32.48%), Postives = 70/117 (59.83%), Query Frame = -1
Query:  164 GKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 511
            GK +++I++   +P  +L+  LT+  G        K+  W IG+I   K P+L G + L++G       PT  ++FRI  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct:  302 GKVVENILVIIHMPKVVLNMTLTAAQGNFTFDPVTKVLIWDIGKIILPKLPTLKGLINLQSGEAKPEENPTLNIQFRIQQLAVSGLKVNRLDMYGERYKPFKGVKYVTKAGKFQVRT 418          
The following BLAST results are available for this feature:
BLAST of DC887816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AP3M2_MOUSE1.752e-1635.90AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2... [more]
AP3M2_HUMAN5.098e-1635.04AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2... [more]
AP3M2_RAT6.658e-1635.04AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=... [more]
AP3M1_PONAB1.937e-1533.33AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1... [more]
AP3M1_HUMAN1.937e-1533.33AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1... [more]
AP3M1_BOVIN1.937e-1533.33AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 P... [more]
AP3M1_CHICK4.316e-1529.06AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M... [more]
AP3M1_MOUSE9.615e-1532.48AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1... [more]
AP3M1_RAT1.256e-1431.62AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M_DISOM1.063e-1332.48AP-1 complex subunit mu OS=Discopyge ommata PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionDC887816 EIC Citrus sinensis cDNA clone EIC0933 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887816 ID=DC887816; Name=DC887816; organism=Citrus sinensis; type=EST; length=535bp
ATAAGCCATTCNANTCACTAAATTCAATTGAATGCATTCCTGCAATTGTC
AAATTTCATGAATTACTGCAGTGCTGAATCCAGCTGCAATATATAATACA
TAACAACTTTGCATCCAGTAGCACAATAAGTTGAAATTCATCTTGATACA
AAATATAGCATCACGACCTCACTTCGTATTCACCTGCTCGTGTTACAGCT
CGAAAACCTTTGTAAAGACGATTTGGGACGTTCTGTAGATCCAGTTTATC
AATTTGCAAGCCAGACAGGGCGACACCCATAATCCTAAATTCGACTTGAA
ATGTAGGAAATACACGAAGAGTCTCCAATCCTGTCTCAAGCACCATTGTT
CCACTCAATGAAGGGGCTTTATCTTTTGGAATTCTCCCAATTGACCAAGT
GCAAATCTTATTGGAAAGAACATTCACTGTTCCATGATTTGAAGTCAGAT
CAGCTGATAAAATGCAAGGAGGTAATTGAAATTGCAGGATTATGGAGTCG
ATTGTCTTCCCAGGGATCATTTCGTATTCCAACCA
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