CN185349

Overview
NameCN185349
Unique NameCN185349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2333 contig Csv1_Contig2333:78..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.464e-97
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 5.488e-97
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTA AMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLVAEYQQYQDATADD
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVAEYQQYQDATADD 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 352.829 bits (904), Expect = 1.223e-96
Identity = 168/174 (96.55%), Postives = 173/174 (99.43%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKMA+TF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.597e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATADD
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADD 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.597e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA+D
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAED 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.085e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.085e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.085e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.085e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.085e-96
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
The following BLAST results are available for this feature:
BLAST of CN185349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TBB5_ORYSJ2.464e-9798.28Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_GOSHI5.488e-9798.28Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB7_ORYSJ1.223e-9696.55Tubulin beta-7 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_ORYSJ1.597e-9697.13Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_ELEIN1.597e-9697.13Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB8_MAIZE2.085e-9697.13Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB6_MAIZE2.085e-9697.13Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB5_MAIZE2.085e-9697.13Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ORYSJ2.085e-9697.13Tubulin beta-4 chain OS=Oryza sativa subsp. japoni... [more]
TBB4_ELEIN2.085e-9697.13Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185349 ID=CN185349; Name=CN185349; organism=Citrus sinensis; type=EST; length=787bp
TTTATTTAGCTTCTAGTGATATCTTTTAACTACTTAATACCCATTACATC
ATTTATATTGAAACACATCATACCCATCCCCCATTACAACGAGACAAGTT
ACATACCAATAAACATCACATTCTAATGATCCCTCAACAACAGAAACAAT
AATCACAAACTGAAAGAGCGCCGACAAGAAATAAATTTCAGACAAACTGG
CCCTGGAACATTAGAAAAAGACACCTCATGCTGCAACTTCCTCTTCTTCT
TCCTCGTACTCCTCGTCGTCAGCAGTTGCATCCTGATACTGCTGGTACTC
TGCCACCAAGTCATTCATGTTACTCTCAGCCTCGGTGAACTCCATCTCGT
CCATTCCCTCACCGGTGTACCAGTGCAAGAAAGCTTTCCTCCGAAACATA
GCCGTAAATTGCTCGCGGACTCGCCTAAACATCTCCTGAATTGACGTTGA
ATTTCCAATGAAAGTGGATGCCATTTTCAGACCCTTAGGCGGGATGTCAC
ACACGCTCGACTTGACATTATTTGGTATCCACTCGACAAAGTACGAAGAG
TTCTTGTTTTGGACATTGATCATTTGTTCATCAACCTCTTTAGTACTCAT
CTTACCACGGAACATGGCCGAAGCAGTTAGGTAACGACCGTGGCGTGGGT
CAGCAGCACACATCATGTTCTTAGCATCCCACATCTGCTGGGTTAGTTCC
GGCACAGTAAGGGCACGATACTGCTGTGATCCTCGTGATGTCAAGGGTGC
AAACCCAACCATGAAGAAATGGAGACGCGGGAAAGGG
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