CN185333
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 216.468 bits (550), Expect = 1.116e-55 Identity = 109/120 (90.83%), Postives = 113/120 (94.17%), Query Frame = -2 Query: 337 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 696 AIK TLDNDEEKVGADIVKRAL YPLKLIA NAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY Sbjct: 482 AIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 5.541e-55 Identity = 110/119 (92.44%), Postives = 111/119 (93.28%), Query Frame = -2 Query: 340 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 696 AIK+TL NDEEKVGADIVKRAL YPLKLIA NAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG Sbjct: 476 AIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52 Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = -2 Query: 337 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 696 AIK+TL+NDE+KVGA+IV+RALCYPLKLIA NAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SD VVVEIKEPE A P NPMDNSG+GY Sbjct: 381 AIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48 Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = -2 Query: 382 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 696 AIK LDNDEEKVGADIVKRAL YPLKLIA NAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP Sbjct: 482 AIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33 Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = -2 Query: 367 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 696 +IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D YGYNAAT +EDLM AGIIDPTKVVRC LE+A SVAKTFL++D VV EI KE PA AG Sbjct: 143 SIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30 Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = -2 Query: 337 IKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 693 IK + + E+++GADI+KRALCYP+KLIA NAGVNGSVV +V+ + D YGYNAAT ++E+LM GIIDP+KVVRC +E+A SVAKTFL++D VV E+KE E A NP+ G+ Sbjct: 313 IKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -2 Query: 346 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 696 +++ +L +EK+G +IV RAL PL+ IA NAG GSVV EK+ D +GYNA TG YEDL+A+GI+DP KVVR L+ A+SVA L ++ +VV+ EPEPAMPAG M G Sbjct: 427 SLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24 Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = -2 Query: 346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 675 ND+++VGA+I+++AL PL+ IA NAG +G+V++ KVL S+++ YG++A G+Y+DL+AAGIIDPTKVVR L+ ASSVA + ++ +V E E + PAMPAG M G Sbjct: 433 NDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24 Identity = 61/109 (55.96%), Postives = 77/109 (70.64%), Query Frame = -2 Query: 346 DEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 672 +EEK+GADIVKRAL PL+ IA NAG GSV+ +V SD GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E +PA+PA M G Sbjct: 433 EEEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSD-FNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKPAVPADPGMGGMG 540
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24 Identity = 64/116 (55.17%), Postives = 81/116 (69.83%), Query Frame = -2 Query: 346 IKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 693 IK+ D +EEK+GADIVKRAL PL+ IA NAGV GSV+ +V SD + GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E + A PA M G Sbjct: 427 IKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540 The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bpback to top |