EY666544

Overview
NameEY666544
Unique NameEY666544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_TRIEI (NAD(P)H-quinone oxidoreductase subunit N OS=Trichodesmium erythraeum (strain IMS101) GN=ndhN PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.692e-20
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  218 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            + D+EK  ++A+Y P E                    ++ARGLGD    LT V+ V P H+GK+ +         +Y PP V+Y+L  LPP AKGLV+WI+E ++LS  E+++L +LP   P+V+VI E G  R F
Sbjct:   11 IRDLEKSGSLAVYPPLEGGFEGRYQRRLRASGYVSESITARGLGDLAMYLTGVHGVRPPHLGKKTVGNGPAVGYVYYVPPIVNYKLEHLPPKAKGLVLWIMEGQILSSQEIEYLTVLPKSEPRVKVIVEMGGDRFF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP4 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQP-------IARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +++ D+EK  A+ IY P E                    +SA GLGD  + LT+V+ V P H+GK         +  ++ PP V+Y L  LPP A+GLV+W+I+ K LS+ EL +L++LP   PKV+++ E G  R+F
Sbjct:    9 QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRPPHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILPAQEPKVKIVIELGGDRQF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP8 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=ndhN PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  227 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +EK  ++A+Y P E                    L+ARGLGD    L  V+ V P H+GK+ I +       ++ PP   Y+L  LPP +KGLV+WI+E  +LS++EL++LA LPTL P+++V+ E G  R F
Sbjct:   14 LEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPPHLGKKNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPTLEPRLKVVIELGGERYF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_NOSP7 (NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.639e-18
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  218 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            + D+EK  A+ +Y P E                    ++A+GLGD    LT+++ V P H+GK+           +Y PP +D  L  LPP +KGLV+WIIE  +LS  EL++L  LP L P+V+V+ E G  R F
Sbjct:   11 IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRPPHLGKKSTGSGAAVGQVYYLPPILDSHLEQLPPKSKGLVLWIIEGHILSNEELEYLTNLPQLEPRVKVVIERGGDRAF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_CYAP7 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7424) GN=ndhN PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.652e-18
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  227 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +EK  A+ +Y P E                   +L+ARGLGD  + LT ++ V P H+GK+ I +       ++ PP   Y+L  LPP +KGLV+WIIE  +LS++E+++L  LP   P+++++ E G  R F
Sbjct:   14 LEKSGALGVYVPLEGGFEGRYQRRLRANGYTPYNLTARGLGDLSSYLTGIHGVRPPHLGKKNIGQDAAVGPVYFVPPIATYQLETLPPKSKGLVLWIIEGMILSRAEIEYLTYLPQQEPRLKIVVEMGGERYF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_ANASP (NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena sp. (strain PCC 7120) GN=ndhN PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.769e-18
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  218 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            + D+EK  ++ +Y P E                     +ARGLGD    LT V+ V P H+GK+           +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP+L P+V+V+ E G  R F
Sbjct:   11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPHLGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTSLPSLEPRVKVVVERGGDRTF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_GLOVI (NAD(P)H-quinone oxidoreductase subunit N OS=Gloeobacter violaceus GN=ndhN PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGN 592
            R+++DVEKH +IA++ P E                    ++A+GLGD    L + + V PAH+GK+    +  PPE+   +  LP SAKG V+WIIE KVLS  EL+ L  LP   PK++VI E G+
Sbjct:   13 RFVADVEKHSSIALWAPPEGGIEGNYQRRLRGIGYRTQIITAKGLGDISRFLLESHGVRPAHLGKKDKRVFTLPPELAIYMDTLPASAKGFVLWIIEGKVLSLFELESLVGLPAAVPKLKVIVEVGS 139          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_THEEB (NAD(P)H-quinone oxidoreductase subunit N OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhN PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWR 598
            +++ D+E   A+A++ P E                    +SA GLGD    LT+ + + PAH GK+ I  ++ PP V Y L  LPP+AKGLV+W+I+ K LSK E  +LA L    PK +V+ E G  R
Sbjct:    8 QFVKDLESAGALALFVPPEGGFEGRYQRRLRSKGYTTLPMSAPGLGDLAAYLTQEHGIRPAHTGKEDIRVYFQPPLVTYHLENLPPNAKGLVLWLIDGKRLSKQEFAYLAQLTQTLPKFKVVVEVGGDR 136          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_ANAVT (NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 51/136 (37.50%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  218 LSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            + D+EK  ++ +Y P E                     +ARGLGD    LT V+ V P H+GK+           +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP L P+V+V+ E G  R F
Sbjct:   11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPHLGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTDLPKLEPRVKVVVERGGDRTF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_CYAA5 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain ATCC 51142) GN=ndhN PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  227 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +EK  A+ +Y P E                    L+ARGLGD    L  V+ V P H+GK+ I +       ++ PP   Y+L +L P +KGLV+WI+E  +LSK+EL++L  LP   P+++V+ E G  R F
Sbjct:   14 LEKSGALGVYAPLEGGFEGRYQRRLRTNGYDSLSLTARGLGDVSAYLMGVHGVRPPHLGKKNIGQGAAVGPIYFVPPIAAYQLESLSPQSKGLVLWILEGYILSKAELEYLVSLPQQEPRIKVVVELGGERYF 146          
The following BLAST results are available for this feature:
BLAST of EY666544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NDHN_TRIEI8.692e-2038.24NAD(P)H-quinone oxidoreductase subunit N OS=Tricho... [more]
NDHN_CYAP41.936e-1936.96NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_CYAP89.610e-1938.35NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_NOSP71.639e-1836.76NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc... [more]
NDHN_CYAP73.652e-1835.34NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]
NDHN_ANASP4.769e-1837.50NAD(P)H-quinone oxidoreductase subunit N OS=Anabae... [more]
NDHN_GLOVI1.062e-1740.16NAD(P)H-quinone oxidoreductase subunit N OS=Gloeob... [more]
NDHN_THEEB1.388e-1737.98NAD(P)H-quinone oxidoreductase subunit N OS=Thermo... [more]
NDHN_ANAVT1.388e-1737.50NAD(P)H-quinone oxidoreductase subunit N OS=Anabae... [more]
NDHN_CYAA55.273e-1736.09NAD(P)H-quinone oxidoreductase subunit N OS=Cyanot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-016-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666544 ID=EY666544; Name=EY666544; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCC
AACAGAAGCAGCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGA
AGGAGAAATGGTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGG
TAATAGTGGCATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAAC
CTGATCTGGGGCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCC
ATTTATACACCACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCT
CAGATACCTGGGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTG
ATCCTGAAACTACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTA
GGAAAGCAACCAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAG
GCTTGCTGCATTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTG
AAGCCAAGGTTCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCT
ACACTCCGGCCAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAA
GTTCTGTGGAAGCCTCTCAAAAAATTTGAGGACTGAATCAAGAAGGCGCA
GCTTGACCACCAAAAGAAAAAGCAAAAATTTGTACTGCCCCAAAAAAAGA
AGCAAATGATAAACTAGAACCCTGACTTGGAAAGATTAAAGCTATTTGCA
AAAAAAAAAGAAAAAAAAAAAGGGGGGCCGCTTCTAAAGGGCCAAGGTTA
CATACCCCGGGCCTGGGGGGAGATAGTCTCTTTATTGGGTCGCCCCGTAA
TTCAATTCCCGGGGCCGGCGTGTTAAAAGGAGCGGGAACGAGC
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