DC887775

Overview
NameDC887775
Unique NameDC887775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.278e-35
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = -2
Query:  329 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTTIV 604
            LEEGPGVLFKALAVFALRQINLTKIESRPLR  PLR+S    G  KYFDYLFYVDFEASMAD+ AQNALRHL+EFATFLRVLGSYP+DTT++
Sbjct:  294 LEEGPGVLFKALAVFALRQINLTKIESRPLRKHPLRAS----GGLKYFDYLFYVDFEASMADEVAQNALRHLEEFATFLRVLGSYPVDTTML 381          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.557e-31
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = -2
Query:  341 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSD-DNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPID 604
            LEEGPGVLFKALAVFALR INL+KIESRP R +PLR  D  N+G  KYFDYLFY+DFEASMAD +AQ+AL HL+EFA+F+R+LG YP+D
Sbjct:  301 LEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYFDYLFYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.045e-25
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  335 EEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDD-NSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTT 601
            E+G  VLFK L+ FA R I+LTKIESRP  N+P+R  DD N G  K+F+Y+FYVDFEASMA+ +AQNAL  ++EF +FLRVLGSYP+D T
Sbjct:  314 EKGTSVLFKVLSAFAFRDISLTKIESRPNHNRPIRVVDDANVGTAKHFEYMFYVDFEASMAEARAQNALAEVQEFTSFLRVLGSYPMDMT 403          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  335 EEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDD-NSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTT 601
            E+G  VLFK L+ FA R I+LTKIESRP  N P+R  D+ N G  K+F+Y+FY+DFEASMA+ +AQNAL  ++EF +FLRVLGSYP+D T
Sbjct:  319 EKGTCVLFKVLSAFAFRNISLTKIESRPNHNVPIRLVDEANVGTAKHFEYMFYIDFEASMAESRAQNALSEVQEFTSFLRVLGSYPMDMT 408          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = -2
Query:  335 EGPGVLFKALAVFALRQINLTKIESRPLRNQPLRS-SDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTT 598
            +G  VLFK L+ FA R I+LTKIESRP +N P+R   D+N G  K+F+Y FYVDFEASMA+ +AQNAL  ++E+ +FLRVLGSYP+D T
Sbjct:  327 KGTSVLFKVLSAFAFRNISLTKIESRPHQNCPVRVVGDENVGTSKHFEYTFYVDFEASMAEARAQNALAEVQEYTSFLRVLGSYPMDMT 415          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = -2
Query:  335 EGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNS-GFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYPIDTT 598
            +G  VLFK L+ FA R I+LTKIESRP  N+PLR   D S G  K F+Y+FYVDFEASMA+ +AQNAL  ++E+ +FLRVLGSYP+D T
Sbjct:  326 KGTSVLFKVLSAFAFRDISLTKIESRPHHNRPLRVVGDGSFGTSKNFEYMFYVDFEASMAEPRAQNALAEVQEYTSFLRVLGSYPMDMT 414          
BLAST of DC887775 vs. ExPASy Swiss-Prot
Match: PHEA_AQUAE (P-protein OS=Aquifex aeolicus GN=pheA PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = -2
Query:  347 LEEGPGVLFKALAVFALRQINLTKIESRPLRNQPLRSSDDNSGFGKYFDYLFYVDFEASMADQKAQNALRHLKEFATFLRVLGSYP 604
            +++ PG L+KAL VF    INLTKIESRP +              K +DY+F+VD E    +++ + AL+ LKE   FL+VLGSYP
Sbjct:  284 VKDEPGALYKALEVFYKHGINLTKIESRPSKK-------------KAWDYVFFVDLEGHKEEERVEKALKELKEKTQFLKVLGSYP 356          
The following BLAST results are available for this feature:
BLAST of DC887775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AROD2_ARATH1.278e-3583.70Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD1_ARATH5.557e-3174.16Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
AROD6_ARATH2.045e-2563.33Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH2.954e-2461.11Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD5_ARATH1.914e-2360.67Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD4_ARATH1.914e-2361.80Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
PHEA_AQUAE3.387e-1244.19P-protein OS=Aquifex aeolicus GN=pheA PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionDC887775 EIC Citrus sinensis cDNA clone EIC0860 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887775 ID=DC887775; Name=DC887775; organism=Citrus sinensis; type=EST; length=605bp
TCGTGAAAGNTTCCTTCATACACGATGAGAACAANTAATACACAAAATAA
GAATATAACAAATATNAGAGTAGAAAAGAAACCCTTGTCCAACTCAAATT
CCTATAAGTAAAACAAGGCTACAAAATTGCATCAAATCTGGCAATAAGCG
AGAATCTGTACTAGCAGGAGCATCCAAGCACCAGATGAGTGATTGCATCA
CCTCAATACCTTTTAGAAACTCATACCATAACGAAAATATGAAGAACTGT
GCATGGCAATGGTTTAAAGTTTTATATCACATTATTGACTCTTCTTAGGG
CCCATAATTACAAGCTTTCATATCATGGTACTATGGTAGTGTCGATAGGA
TAGCTCCCCAAAACTCGTAGGAAAGTAGCAAACTCCTTCAAATGCCTCAG
AGCATTTTGTGCCTTCTGATCAGCCATTGATGCTTCAAAATCCACATAGA
AAAGATAATCAAAGTATTTTCCAAACCCGCTGTTGTCATCAGATGATCGC
AATGGCTGATTCCTCAAAGGACGGCTTTCAATCTTTGTAAGGTTGATTTG
CCTTAAAGCAAATACAGCAAGTGCCTTGAAAAGCACTCCAGGACCCTCCT
CTAAT
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