CN185286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23 Identity = 61/142 (42.96%), Postives = 80/142 (56.34%), Query Frame = -3 Query: 437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835 RF DE++Q ++ EM G +C RP+R+G A K A Y Q D N+T+FVGGL V+++ LK +F +GE+V+VKIP GK CGFVQF NR AE A++ L G LG IRLSWGR+ Sbjct: 234 RFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20 Identity = 52/140 (37.14%), Postives = 81/140 (57.86%), Query Frame = -3 Query: 437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835 RF E EQ ++ M G LC RP+RI A+ K A+ + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++++KIP GK CGFVQ++ ++ AE+A++ + G +G IRL+WG + Sbjct: 230 RFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.303e-18 Identity = 54/175 (30.86%), Postives = 85/175 (48.57%), Query Frame = -3 Query: 437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835 +F + EQ +++EM GV + R +++GP + ++ + + ++ N + S G N DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ+ +R AE A++ + G + +RLSWGRS Sbjct: 211 KFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.141e-17 Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 362 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 667 DP NTT+FVGGL P T+ L+++F +G +++V+IP GK CGFV+F R AE ++ L G +GG IRLSWGR S+ + G Y + G A Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 The following BLAST results are available for this feature:
BLAST of CN185286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185286 ID=CN185286; Name=CN185286; organism=Citrus sinensis; type=EST; length=837bpback to top |