CN185286

Overview
NameCN185286
Unique NameCN185286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23
Identity = 61/142 (42.96%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835
            RF DE++Q  ++ EM G +C  RP+R+G A  K  A                  Y   Q      D  N+T+FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR  AE A++ L G  LG   IRLSWGR+
Sbjct:  234 RFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 52/140 (37.14%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835
            RF  E EQ  ++  M G LC  RP+RI  A+ K  A+            +  N Q +Q     DP NTT+FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++ AE+A++ + G  +G   IRL+WG +
Sbjct:  230 RFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.303e-18
Identity = 54/175 (30.86%), Postives = 85/175 (48.57%), Query Frame = -3
Query:  437 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 835
            +F +  EQ  +++EM GV  + R +++GP + ++   +      + ++  N +              S G N                          DPNNTT+F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R  AE A++ + G  +    +RLSWGRS
Sbjct:  211 KFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CN185286 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.141e-17
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  362 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 667
            DP NTT+FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R  AE ++  L G  +GG  IRLSWGR  S+     +   G   Y  + G  A
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
The following BLAST results are available for this feature:
BLAST of CN185286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YG41_SCHPO1.531e-2342.96Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO1.213e-2037.14RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST3.303e-1830.86Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST2.141e-1743.14Negative growth regulatory protein NGR1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185286 ID=CN185286; Name=CN185286; organism=Citrus sinensis; type=EST; length=837bp
GGGGGGAGCGGAACCCGTTTTTTTTTTTTTTTTAAGTTCGAAAATACTGC
AATATCTAGTCTGCATGCTACCCCTTTTCGCATAAATAAATGCTTCAAAT
ACACAACATTGCAGATACTAAATAAAAAGAGAAAAAAAAAATCAATAAAC
TATCTCCAAGCACTCACATCATCCTCAACAACCAAACAACAAATACCTTC
CTAAAATTCAATTTGATTATGGCTACCCCAGCTTCAAGACTTGCACCATA
AATACATCACTGCTGTGGCTGTTGGTAAGACCCTGGCTGTTGGTAAGTCC
CATATCCAGGAAAGCCCCCATAGTACATGTTCGGGTCTTGGGTAGGAGGC
GCATATCCATATGCCTCGTATCCTTGTGCAAAACCATAGTATCCACCACC
GTTCCATTGGGCCTGATCCGACTGTTTGTTTGAAGGACTACGCCCCCATG
ACAGTCTAATGCTTTGTCCTCCTAATTGGGTGCCATTCAAAACTGATAGT
GCTTGCTCCGCACAAGTTCTGTTAGCAAACTGAACAAACCCGCAGCGCTT
GCCCGCTGGTATTTTCACATGAACTAACTCACCATATTGACCAAAAACTG
TTTTCAAAATGTCATCTGTAACACTAGGATCCAAACCCCCAACAAATATT
GTTGTATTATTTGGATCATTCTCGCCCTGGCTTCCTTGGGTATTTTGATA
AGTAGCTTTCTGATATTGCTGGCCAGTGGCAGCTTTCTTGGTGGCAGCTG
GCCCAATCCGCATAGGTCTAGTAGAGCAGAGCACGCCATTCATTTCGGTC
ATGGAACGCAATTGTTCACTTTCATCCCCAAATCTCA
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