CN185267

Overview
NameCN185267
Unique NameCN185267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185267 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 2 
Query:  128 MFDHHQWGVAFGILCNIISFLVYLAPVPTFYRIYRKKSTESFQSLPYLVALFSSMMWFYYAL--VKHNAFLLVTINCFGCVIETIYIILFITY-APKGSRNSTVKLFDSMNVGVFSLILLLTHFLATG 502
            M D  Q     G++ N+ISF ++ AP  TF+RI++KKS E F  +PY+  + + M+W +Y L  V  ++ L+ TIN  G VIE  Y+ +++ Y   K +    +  F ++ V +   I+L+T F   G
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKG 128
The following BLAST results are available for this feature:
BLAST of CN185267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH1.110e-1434.38Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185267 ID=CN185267; Name=CN185267; organism=Citrus sinensis; type=EST; length=511bp
GAGGAAGAAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAGGC
CCTTGCTTGATCTTCTGATCAAATTTCGTTGTTGAGTGTTCAAAATTCAT
TTTTTGTTTACTAAGAAAATGGCCATAATGTTCGATCACCATCAATGGGG
AGTTGCATTTGGCATCTTATGTAACATTATCTCGTTCCTCGTGTACCTGG
CTCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGAGC
TTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGATGTGGTT
CTACTATGCGCTTGTGAAACATAATGCTTTCCTTCTCGTTACCATCAACT
GCTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTTAT
GCCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGATTCGATGAA
CGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAACCG
GTTCAACTCGG
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