CN185262

Overview
NameCN185262
Unique NameCN185262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185262_ssr445 microsatellite CN185262_ssr445:445..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:691..1375. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185262 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -1 
Query:  566 YLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 688
            YLNGQ+LSFKVTTSDGRTV S+N APA WS+G+T++G QFR
Sbjct:  209 YLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249
[Close]
BLAST of CN185262 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = -1 
Query:  566 LNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 685
            LNGQ+LSFKVT SDGRTV S N+APASWSFG+T++G QFR
Sbjct:  214 LNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253
[Close]
BLAST of CN185262 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = -1 
Query:  566 YLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 688
            YLNGQSLSF VTTSD R+V S+NVAP +WSFG+TY+G QFR
Sbjct:  214 YLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254
[Close]
BLAST of CN185262 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = -1 
Query:  566 YLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 688
            YLNGQSLSFKVTTSDG+T+ S NVA A WSFG+T++GAQ R
Sbjct:  210 YLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250
The following BLAST results are available for this feature:
BLAST of CN185262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EXP10_ARATH2.538e-1275.61Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH2.149e-1177.50Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA5_ARATH2.806e-1175.61Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA1_ARATH4.787e-1175.61Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185262 ID=CN185262; Name=CN185262; organism=Citrus sinensis; type=EST; length=688bp
TTTGAAGGACTCAAGTAGNACTTTNCGTTGATTAATTACCATTAAAGGGA
AATTTACACCTCCAATCTCGTACAAATTTAGCCATTACATCCAACGACAT
AATACTCAGCCAAATCTGCTGATTACAATTAAACTTGCACTCCAAAAAGT
GCTTCTGGGCAAGCAATTCCAAGAAGCATCAAAAAAAGAGAAGCAGCTAT
TTCAAACACAAATGGCGGGTGGAAAAATTTCCACCTCAGCCATCTGTTGC
ACTTCAACAGAAACCCCCAAAAAGAAAGGTAAAAAAAGGATCCCCAAGAT
AATAAGAGGATCCCATAATTAGACACCCCACGCAACCATAAAAATCAATT
CAAAATGAAAAAAAATAAGCCATTTTAAAATAAGCCCCTTTTTTTCATTT
TTGACCCTGGAAGCCAAAAACTAGCCACATAGCTACTTCTATATTATATA
TATATATATATACCCTAGTATGCTAAAATTTCATACTAAAATATACTACT
TAGTACACGAATATTTAGCTAAAAAAGGTGTTAAAACCCAATCTCTAATG
GTCTTGGTGGCTCTAGCGGAATTGAGCACCGGAGTAAGTTCGGCCAAAGG
ACCAGCTAGCAGGGGCAACATTGTAGGAAGTCACAGTGCGGCCATCGCTT
GTGGTGACCTTAAATGACAGGCTTTGGCCATTGAGATA
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