DC887760

Overview
NameDC887760
Unique NameDC887760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887760_ssr323 microsatellite DC887760_ssr323:323..334. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1418 contig Csv1_Contig1418:465..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887760 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.037e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = -2 
Query:  235 LPQALKKWQAYEGNSNIGDXXXXSFLASTDNTQTSIPTRPSGFADSFTSADGR 393
            LPQALKKWQAYEG S++ +    S L S DNTQ SIPTRP GFA+SFTS DGR
Sbjct:  891 LPQALKKWQAYEGRSDL-ESSTSSLLPSLDNTQMSIPTRPYGFAESFTSVDGR 942
The following BLAST results are available for this feature:
BLAST of DC887760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMK1_ARATH1.037e-1269.81Probable receptor protein kinase TMK1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionDC887760 EIC Citrus sinensis cDNA clone EIC0839 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887760 ID=DC887760; Name=DC887760; organism=Citrus sinensis; type=EST; length=394bp
GTNCTCTCTATTTGCTTTTTAAGAACTTCTGAAAACCAGAAAAACATTAA
AAAAAATTCAAACTACAGAGATAATGCGGAGAATTAAGGCATCTCCAGCA
GAATATAGCAAAAAGAGAACCAAGCCTCACAAAGAGAGAAAACAAAGAAG
CATAAAGAATGAACAAAGCAAACCTCTAGAAACCATTAACAGATACCCAC
ATCTAATCTTCCATTCCTTTCTTGCCCTCCTTCATCGTCCGTCAGCTGAT
GTAAATGAATCAGCAAATCCGGATGGCCTTGTGGGTATGCTGGTCTGGGT
ATTATCTGTGCTGGCAAGGAANGAAGAAGAAGAAGAGTCACCAATGTTGC
TGTTTCCCTCATATGCCTGCCACTTCTTTAATGCTTGCGGTAAA
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