CN185255

Overview
NameCN185255
Unique NameCN185255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185255 vs. ExPASy Swiss-Prot
Match: FMT_BACLD (Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=fmt PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.318e-14
Identity = 33/100 (33.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    9 DGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNK 308
            +G ++TGV++ + V  LDAG ++A+ ++++++      L   L   G+ LL   +P I+DGS  V  + QD+ KAT AP I  E+  + + +   VL+N+
Sbjct:  127 EGKEKTGVTIMYMVEKLDAGDMLAKVEVDIEETDNVGTLHDKLSKAGAALLSETVPRIIDGS--VTPEKQDEQKATYAPNIKREQELIDWSKPGEVLYNQ 224          

HSP 2 Score: 36.1946 bits (82), Expect = 4.318e-14
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 2
Query:  353 NGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAF 541
            NGQ     LK+   + C  ++  E   I T +KD +VV  G  TAL++ EVQ  GKK + A  F
Sbjct:  239 NGQT----LKVWAAKKCQALKQAEPGEIVTVEKDGIVVATGNDTALKLTEVQPAGKKRMKAEDF 298          
BLAST of CN185255 vs. ExPASy Swiss-Prot
Match: FMT_LACAC (Methionyl-tRNA formyltransferase OS=Lactobacillus acidophilus GN=fmt PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.288e-14
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 3
Query:    9 DGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHN 305
            +G KETG+++   V+ +DAG + A+E ++++ +  A  L   L   G +LL++ LPSI+DGS  VK  PQD  K   +P IT E+  LS D  A   +N
Sbjct:  127 NGDKETGITIMEMVKKMDAGDIYAQEAIKIEPEDNAGTLFSKLSILGRDLLLKTLPSIIDGS--VKKTPQDPDKVVFSPNITKEQERLSIDMTAEQANN 223          

HSP 2 Score: 27.335 bits (59), Expect = 7.288e-14
Identity = 18/65 (27.69%), Postives = 28/65 (43.08%), Query Frame = 2
Query:  353 NGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWN 547
            NGQ+     K+    V  +  + E   +   K    +   + T L +LEVQ  GKK ++   F N
Sbjct:  239 NGQR----FKVWEAEVASDSSSLEAGTVVANKGRFAISFADNTVLNLLEVQPSGKKRMNIKNFLN 299          
BLAST of CN185255 vs. ExPASy Swiss-Prot
Match: FMT_SYNWW (Methionyl-tRNA formyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fmt PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.764e-11
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    9 DGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNK 308
            DG K +G+++ F    LD G +I +E + VDD I   EL  +L   G++LL++ +  ++ G  ++    QDDS+A+ A +I+ E+  +++ E A  +HN+
Sbjct:  126 DGIKSSGITIMFMDEGLDTGDIIMQEAIAVDDNINHGELEKILADMGADLLLQVVDRLVQGE-KLPRVVQDDSQASYAARISKEDEIINWSEPAYAIHNR 224          

HSP 2 Score: 24.6386 bits (52), Expect = 1.764e-11
Identity = 18/40 (45.00%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  422 EVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAF 541
            EVD  TF+     V  GE   LEVLE+Q  GKK +  + F
Sbjct:  264 EVDKNTFQ-----VQTGE-GILEVLEIQKAGKKRMPTSEF 297          
BLAST of CN185255 vs. ExPASy Swiss-Prot
Match: FMT_STACT (Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain TM300) GN=fmt PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.291e-11
Identity = 33/99 (33.33%), Postives = 57/99 (57.58%), Query Frame = 3
Query:    9 DGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHN 305
            DG KETGV++ +    LDAG +I+++ +E++       +   L   G++LL + LP I++G+    A  QDD KAT A  I+ E+  + + + A  ++N
Sbjct:  126 DGEKETGVTIMYMAPKLDAGDIISQQAIEIEANDNVESMHDKLSFLGADLLKKTLPEIINGTNDRIA--QDDDKATFASNISREDERIDWTQSAEQVYN 222          

HSP 2 Score: 31.5722 bits (70), Expect = 2.291e-11
Identity = 22/77 (28.57%), Postives = 35/77 (45.45%), Query Frame = 2
Query:  311 WPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAF 541
            WP    K+   DD N       +K+   R+    + N  + +   K A++V  G   A+ + E+QL GKK +  A F
Sbjct:  230 WPVAYTKL---DDTN-------MKLYAARIEEGKKGNPGEILETTKKAIIVGTGSDDAIALTEIQLSGKKRMPTANF 296          
BLAST of CN185255 vs. ExPASy Swiss-Prot
Match: FMT_KOSOT (Methionyl-tRNA formyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=fmt PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.010e-11
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 3
Query:    9 DGAKETGVSLAFSVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWL 272
            +G KETG+++      +D+GP+  +E++E+        L   L + G +LLI  L  I  G   +K  PQD S+AT APKIT E++ L
Sbjct:  126 NGEKETGITIFKIDEGMDSGPIALQERIEISSDDNFGTLKKKLCNLGKKLLIEFLKKISAG--EIKLTPQDHSQATYAPKITKEDTIL 211          

HSP 2 Score: 31.9574 bits (71), Expect = 5.010e-11
Identity = 16/55 (29.09%), Postives = 32/55 (58.18%), Query Frame = 2
Query:  371 VELKIITTRVCPNIQTNEVDG--ITFKKDALVVPCGECTALEVLEVQLPGKKAVS 529
            + +K+    +C N   +   G  I+  KD++VV C +  A+++ ++Q PGKK ++
Sbjct:  240 LRVKLFGAGICDNCCVDAEPGQIISISKDSMVVACKK-GAVKISKIQFPGKKVIT 293          
The following BLAST results are available for this feature:
BLAST of CN185255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FMT_BACLD4.318e-1433.00Methionyl-tRNA formyltransferase OS=Bacillus liche... [more]
FMT_LACAC7.288e-1439.39Methionyl-tRNA formyltransferase OS=Lactobacillus ... [more]
FMT_SYNWW1.764e-1133.00Methionyl-tRNA formyltransferase OS=Syntrophomonas... [more]
FMT_STACT2.291e-1133.33Methionyl-tRNA formyltransferase OS=Staphylococcus... [more]
FMT_KOSOT5.010e-1137.50Methionyl-tRNA formyltransferase OS=Kosmotoga olea... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185255 ID=CN185255; Name=CN185255; organism=Citrus sinensis; type=EST; length=701bp
AGTATTAGGATGGAGCTAAAGAAACAGGAGTATCACTGGCATTTTCCGTC
CGAGCACTTGATGCTGGACCTGTCATTGCCCGGGAGAAAATGGAAGTTGA
TGACCAAATTAAGGCACCAGAGTTACTAGTATTGCTCTTTTCTGAAGGTT
CTGAACTTCTTATACGTGAGCTTCCTTCTATATTAGATGGGTCAGCTAGG
GTGAAAGCACAACCTCAAGATGATTCTAAAGCCACCTTGGCTCCAAAGAT
AACTACTGAGGAGTCATGGCTGTCCTTCGATGAAGAAGCTGTTGTTCTTC
ATAATAAGGGTGGCCAGGAACACGAGCTAAAATGGCGGTCGTGGATGACA
GAAATGGTCAGCAAAGTATCGTAGAACTAAAGATAATTACTACAAGAGTT
TGCCCCAACATTCAGACCAATGAAGTAGATGGCATCACATTCAAAAAGGA
TGCACTGGTAGTTCCATGTGGAGAGTGTACTGCGCTTGAGGTATTGGAAG
TTCAGCTTCCTGGGAAGAAGGCAGTGAGTGCCGCTGCCTTTTGGAATGGT
TTACGAGGTAAAAAACTAAAGGTACTATAGTAGAGGAGGCATATCATCTG
AGGAAATTTAATATGCGGGTAAAGTTTAAAGTTGAGCAAATTGGTTGACT
TAATTATTTTGCTATTATTTTGGTTCCCTTCCTTCTTTTGGATTCTTTCA
T
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