CN185253

Overview
NameCN185253
Unique NameCN185253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:219..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185253 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 CCNCSCPDRSPCVKKGSTYAADFVQTDLSFVGTVVVMDVLAAEAEGNCSCGPTCACVNCACG 186
            C NC C D++ CVKKGS+Y AD ++T+ S +   VVMD  AAE +G C CGP+C+C NC CG
Sbjct:    5 CGNCDCADKTQCVKKGSSYTADIIETEKSIM--TVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN185253 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 CCNCSCPDRSPCVKKGSTYAADFVQTDLSFVGTVVVMDVLAAEAEGNCSCGPTCACVNCACG 186
            C NC C D+S CVKKG++Y  D V+T+ S+V  V+V    AAE +G C CG  CAC +C CG
Sbjct:    4 CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCG 64          
BLAST of CN185253 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 CCNCSCPDRSPCVKKGSTYAADFVQTDLSFVGTVVVMDVLAAEAEGNCSCGPTCACVNCAC 183
            C NC C D S C KKG ++    V+T+   + TV+ MD  AAE  GNC CGP+CACV+C C
Sbjct:    5 CSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CN185253 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.807e-12
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 CCNCSCPDRSPCVKKGSTYAADFVQTDLSFVGTVVVMDVLAAEAEGNCSCGPTCACVNCAC 183
            C NC C D S CVKKG++   D V+TD S++  VV M V AAE+ G C CG +C CVNC C
Sbjct:    5 CGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN185253 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 CCNCSCPDRSPCVKKGSTYAADFVQTDLSFVGTVVVMDVLAAEAEGNCSCGPTCACVNCACG 186
            C NC C D + CVKKG++Y    V+T+   + TV V D  AAE +G C CG  C+CV+C CG
Sbjct:    5 CDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
The following BLAST results are available for this feature:
BLAST of CN185253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MT3_CARPA5.224e-1654.84Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.423e-1351.61Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV4.577e-1250.82Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_ACTDE7.807e-1254.10Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO3.874e-1148.39Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185253 ID=CN185253; Name=CN185253; organism=Citrus sinensis; type=EST; length=543bp
TGCTGCAACTGCTCCTGCCCTGACAGGAGCCCGTGTGTGAAGAAGGGAAG
CACCTATGCTGCTGACTTCGTCCAGACTGACTTGAGCTTTGTCGGCACCG
TTGTTGTCATGGACGTTCTGGCTGCTGAGGCTGAAGGTAACTGCTCGTGC
GGCCCCACCTGCGCTTGTGTGAACTGCGCTTGTGGTACTCACTAATAACC
AAACTCATGCATCAAAAAATGAGAAGCTGCAAGTGTGCCTAAGTATTGTG
GGGGTTAAGAATAATGTAAGGGTGATTGAAAAAAAAAAGAAAAATTCGCT
ACTGCGTTTTTATGATGGCCTCCTACTAGTGTGTGGAGTGATGTGCGTGT
TGTGTCACCCATCACTCCTAATGTTTTGTGTTTCCTTCTTCATAATCATG
TAATATATGGCCATGGCCGTGACCGTGGCCTTGTGTGGTTTAATTTTGAG
CAAAGAAACTTTCCTACAATAAACAGCCCTCTATTTCCAGTTTTAAATTC
CTAGTTCTAACCCCAATCCACATGTCGGACACCTGCCGCAACT
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