EY666534

Overview
NameEY666534
Unique NameEY666534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 3.063e-105
Identity = 193/246 (78.46%), Postives = 215/246 (87.40%), Query Frame = 3
Query:   15 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPEDIITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGRGERGF 752
            M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLTRFVWDEAKYPTMSPL+E+VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLS+LVKPEDI+ SEHLVTLLAVVPKYSQKDW+A YETLT YVVPR+SK L EDNE  LYT  LF RVA+NF IA R E+GF
Sbjct:    1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEHLVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAAR-EKGF 245          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.403e-88
Identity = 164/251 (65.34%), Postives = 200/251 (79.68%), Query Frame = 3
Query:   15 MASRYWVVSLPV--QNSAA---SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPEDIITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGRGERGF 752
            MA+RYW+ +LPV   N AA   ++W RLQE IS+HSFDTPLYRF +P+LR GT           VKSN F+E VSHKIRRQIE+LER  G+E  +L+VDGVPVD+YLTRFVWDE KYP  +PL+E V  I + VAKIEDD+KVRVAEY NV+SQL AINRKQ+GSLAVRDLS+L+KPED++TSEHLVTLL++VPKYSQKDW+ASYE+L ++VVPR+SK L EDNE  LYT  LF +V +NF++  R E+GF
Sbjct:    1 MATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERAGGVEPGTLTVDGVPVDSYLTRFVWDEGKYPVNAPLKETVASIQSQVAKIEDDMKVRVAEYGNVKSQLGAINRKQTGSLAVRDLSNLIKPEDMVTSEHLVTLLSIVPKYSQKDWLASYESLDTFVVPRSSKKLYEDNEYALYTVTLFAKVVDNFKVHAR-EKGF 250          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.549e-40
Identity = 90/241 (37.34%), Postives = 143/241 (59.34%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W++L    ++ +  +   +FNIP+L+VGT            K ++FVESV  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V++I++DLK R + YNN++  L  + RK +GSL  R L+D+VK +D ++ SE+L+TLL VVPK +  DW  +YETL   VVPR++ LL ED++  L+T  LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWDKLMTATTRTNNLSTNNKFNIPDLKVGTLDVLVGLSDELAKLDAFVESVVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYVTRFQWDMAKYPIKQSLKNISEIISKQVSQIDNDLKARASAYNNLKGNLQNLERKNAGSLLTRSLADIVKKDDFVLDSEYLITLLVVVPKTNYTDWQRTYETLAEMVVPRSTNLLFEDHDSGLFTVTLFRKAIDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 90/241 (37.34%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 90/241 (37.34%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 166.007 bits (419), Expect = 2.642e-40
Identity = 90/241 (37.34%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    SK++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 7.687e-40
Identity = 89/241 (36.93%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.004e-39
Identity = 89/241 (36.93%), Postives = 136/241 (56.43%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFKKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 164.081 bits (414), Expect = 1.004e-39
Identity = 89/241 (36.93%), Postives = 136/241 (56.43%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    +K++      +FNIP+L+VGT            K ++FVE V  K+ + + + LE        +L   GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLHAATTKNNNLAVSSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLASGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
BLAST of EY666534 vs. ExPASy Swiss-Prot
Match: VATC1_XENTR (V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.237e-39
Identity = 88/241 (36.51%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   21 SRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEE-LERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSDLVKPED-IITSEHLVTLLAVVPKYSQKDWVASYETLTSYVVPRASKLLDEDNE*CLYTGALFGRVANNFEIAGR 737
            + +W++S P + +    W +L    +K++  +   +FNIP+L+VGT            K ++FVE    K+ + + + LE        +L  +GV + TY+TRF WD AKYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+L+TLL VVPK +  DWV  YETL   VVPR+S +L ED +  L    LF +  ++F    R
Sbjct:    2 TEFWLISAPGEKTCQQTWEKLMAATTKNNNLSTNAKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGTVKKVAQYMADVLEDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKARASAYNNLKGNLQNLERKNAGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYNDWVKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKAR 242          
The following BLAST results are available for this feature:
BLAST of EY666534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_ARATH3.063e-10578.46V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU3.403e-8865.34V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
VTC1A_DANRE1.549e-4037.34V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC1_PONAB2.642e-4037.34V-type proton ATPase subunit C 1 OS=Pongo abelii G... [more]
VATC1_MACFA2.642e-4037.34V-type proton ATPase subunit C 1 OS=Macaca fascicu... [more]
VATC1_HUMAN2.642e-4037.34V-type proton ATPase subunit C 1 OS=Homo sapiens G... [more]
VATC1_BOVIN7.687e-4036.93V-type proton ATPase subunit C 1 OS=Bos taurus GN=... [more]
VATC1_RAT1.004e-3936.93V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE1.004e-3936.93V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]
VATC1_XENTR2.237e-3936.51V-type proton ATPase subunit C 1 OS=Xenopus tropic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-016-A03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666534 ID=EY666534; Name=EY666534; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGGAAATGGCATCAAGGTACTGGGTGGTGTCTCTTCCAGTA
CAAAATTCAGCCGCTTCTGTTTGGAATCGATTACAGGAACAAATCTCTAA
ACATTCATTTGACACTCCTCTTTACAGGTTTAATATCCCCAACCTCCGTG
TTGGAACCCTAGATTCACTCCTTGCACTTAGCGATGATCTCGTGAAGTCA
AATAGCTTTGTTGAATCAGTATCTCACAAGATCAGGCGACAGATTGAGGA
ACTGGAGAGGGTATCAGGCATAGAGAGTAGTTCTTTGAGTGTTGATGGAG
TACCAGTTGATACTTATCTCACTAGGTTTGTTTGGGATGAAGCAAAGTAC
CCAACTATGTCACCTTTAAGGGAAATTGTGGATGGCATTCATACTCTTGT
GGCAAAGATTGAAGACGATCTTAAGGTTCGTGTTGCTGAGTATAATAATG
TCCGCAGTCAGCTGAATGCTATTAATCGAAAGCAAAGTGGAAGCTTAGCT
GTTCGTGATCTTTCCGATCTGGTAAAACCAGAGGATATCATTACCTCAGA
ACATCTTGTAACCCTTCTTGCTGTTGTCCCCAAGTACTCCCAGAAAGATT
GGGTGGCTAGCTATGAGACGTTGACTAGCTATGTGGTCCCCAGGGCCTCC
AAGCTATTGGATGAGGATAATGAATAATGCCTTTACACTGGCGCACTATT
TGGACGGGTTGCAAACAATTTCGAAATAGCTGGCCGTGGAGAAAGGGGGT
TCCCAAATTGTGGGGATTTGAAAGTGAAGGGCGGAGAGCCAAGGACAGGG
CGAGCACGGGCGCGGGAGAGAAAATATAACTACGAAGGAAAAGAGATAGA
TAAAAGTCTGTGTGTGAGGAGTGGAGACGGGTGAAGGGGGCGGGGACGTA
GCG
back to top