CN185220

Overview
NameCN185220
Unique NameCN185220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.599e-21
Identity = 56/112 (50.00%), Postives = 68/112 (60.71%), Query Frame = -3
Query:  159 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQV---XXXXXXALVEMGDRIESECSGSGGEPDCGDWWE 485
            + GVRKRRWG +VSEIR P +K+RIWLGSF   E AA+AYD AAF LKG  A LNFP     LPRP +C+ +DIQV          +++MGD          G  D  D+WE
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANAVKIIKMGD------DDVAGIDDGDDFWE 150          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.089e-21
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = -3
Query:  261 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 500
            +N T +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KGN   LNFP  +G LPRP SCS KDIQ
Sbjct:   66 KNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQ 145          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = -3
Query:  261 NDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 497
            N   +RG+R+R+WG +VSEIR PG+KTRIWLGS+ +AE AA AYD+AA +L+G    LNFP    + PRPES S + IQ
Sbjct:   16 NQLSYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQ 94          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  258 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQV 485
            +RGVRKR WG +VSEIR P +K+RIWLG+F S E AARA+D AA  +KG  A LNFP  AG+ PRP S S +DIQV
Sbjct:   36 YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQV 111          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.355e-19
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  258 QND-----TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQV 500
            QND     + +RGVRKR+WG +VSEIR PG K RIWLGSF + E AA AYD AAF+ +G  A LNFP  A +LPRP   S   I++
Sbjct:   14 QNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRM 99          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            FRGVR R+WG +VSEIR P +K+RIWLG+F +AE AARA+D AA  +KG  A LNFP  A  LPRP S   KDIQ
Sbjct:   45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 119          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  261 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 500
            ++D  +RGVR R WG +VSEIR P +K+RIWLG+F + E AARA+D+AA  +KG  A LNFP  A  LPRP S S +D+Q
Sbjct:   38 RSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQ 117          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KG  A LNFP  AG LPRP + S KDIQ
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQ 174          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            FRGVR R+WG +VSEIR P +K+RIWLG+F + E AARA+D AA  +KG  A LNFP  A  LPRP S   KDIQ
Sbjct:   40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 114          
BLAST of CN185220 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.823e-18
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  261 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 485
            +RG R R WG +VSEIR P +K+RIWLG+F +AE AARA+D AA  +KG+ A LNFP  A  LPRP S S++DIQ
Sbjct:   26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQ 100          
The following BLAST results are available for this feature:
BLAST of CN185220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF23_ARATH1.599e-2150.00Ethylene-responsive transcription factor ERF023 OS... [more]
ERF35_ARATH2.089e-2161.25Ethylene-responsive transcription factor ERF035 OS... [more]
ERF22_ARATH3.016e-2056.96Ethylene-responsive transcription factor ERF022 OS... [more]
TINY_ARATH5.145e-2063.16Ethylene-responsive transcription factor TINY OS=A... [more]
ERF21_ARATH4.355e-1955.81Ethylene-responsive transcription factor ERF021 OS... [more]
ERF38_ARATH5.688e-1962.67Ethylene-responsive transcription factor ERF038 OS... [more]
ERF37_ARATH5.688e-1956.25Ethylene-responsive transcription factor ERF037 OS... [more]
ERF34_ARATH9.703e-1961.33Ethylene-responsive transcription factor ERF034 OS... [more]
ERF39_ARATH2.162e-1861.33Ethylene-responsive transcription factor ERF039 OS... [more]
ERF42_ARATH2.823e-1860.00Ethylene-responsive transcription factor ERF042 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185220 ID=CN185220; Name=CN185220; organism=Citrus sinensis; type=EST; length=574bp
GATTTTACACAAAAAAAAGTCCTTTACAATTCTAAACAAGACCCCAGTAG
AAAATTATCATCATCCATCCAACAATACAGCTCCCCAATGTCCGAGTCAA
ATCTGGGTGGACTCAGCAATGGCGCCACCTTCACTTCATCAGACGCCGTC
GTTTCCCTTTCCCACCAATCTCCACAGTCCGGTTCACCACCCGAACCGCT
GCATTCCGACTCAATCCGGTCGCCCATCTCTACAAGAGCCGCAGCTTTAG
CGGCTGCTACCTGTATGTCTTTCCTCGAACAAGACTCCGGTCGAGGAAGC
GCGCCGGCCGAGGCCGGAAAGTTAAGAGTCGCCAAGTTGCCTTTTAAATA
GAAAGCCGCAGAGTCATAAGCCCGAGCCGCCTTCTCGGCTGACCCAAATG
ACCCGAGCCATATCCGGGTCTTTTCACCTGGCAACCGTATCTCCGAAACG
TAGCTGCCCCACCTCCGTTTACGCACTCCCCGAAACGGCGTGTCGTTTTG
GCGTGTCCTTTTCTTTGAACCCGGTTTGGAGGTTGACGAACCGGGTTGAA
GTTGTGAAGGCTCTTGTGTTTGTG
back to top