DC887722

Overview
NameDC887722
Unique NameDC887722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:106..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 5.372e-53
Identity = 106/145 (73.10%), Postives = 115/145 (79.31%), Query Frame = -3
Query:  186 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSVD 620
            KYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                          GTKFT ED+MQ+VD
Sbjct:    2 KYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.911e-50
Identity = 101/145 (69.66%), Postives = 114/145 (78.62%), Query Frame = -3
Query:  186 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSVD 620
            K+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                          GTKF+ ED+M++VD
Sbjct:    2 KFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMENVD 146          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 95/144 (65.97%), Postives = 108/144 (75.00%), Query Frame = -3
Query:  189 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXGTKFTPEDIMQSV 620
            KYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                          GTKFT  D+MQ+V
Sbjct:    2 KYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQNV 145          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 78/106 (73.58%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 78/106 (73.58%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 78/106 (73.58%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 78/106 (73.58%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.862e-38
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:    2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107          
BLAST of DC887722 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = -3
Query:  306 KYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 620
            K  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    2 KSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of DC887722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL261_ARATH5.372e-5373.1060S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH1.911e-5069.6660S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA1.282e-4665.9760S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN1.678e-3874.5360S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE2.191e-3873.5860S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA2.191e-3873.5860S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN2.191e-3873.5860S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN2.191e-3873.5860S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT2.862e-3873.5860S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME3.499e-3671.7060S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionDC887722 EIC Citrus sinensis cDNA clone EIC0789 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887722 ID=DC887722; Name=DC887722; organism=Citrus sinensis; type=EST; length=622bp
CGAAACGACGAGGAGAAAATCCAAAGAAGTATCTTAAATCTCCAACATAA
GCCCATAATCGGATCCTCATGACATAACACAATAACAATAGAAATATCAT
AGTGACATTGCCAAAACAAAACATCCTAAATCCATAAATTCTATGATTAA
ACAAAAACTTTAAAAACAACCTCTTATCAAAATTAGTCAACGCTCTGCAT
AATATCCTCTGGGGTGAACTTGGTACCCTTCTCCTTGTCGGCGGCGGCAC
GTCCCTTGGCCTTGCGATCGAGCAAAGACTTCCTGTCCTTGTCCAGACGG
AGCTTGGTGATCACGACCTTTGATGGGTTGATTCCCACATTCACAGTGGA
TCCATTAACCTTCTCGCGAGTGATGCGCTCGATGTGAATGACCCACTTCC
GGCGATACACTTGAACGACTTTGCCCTCGCGCCCCTTGTAGGTCCCACGC
ACAACCTGAACCTCGTCGTCCTTGCGCACAGGCATCGACCTTACGTTGTA
CTTCTGACGGAGGTCTGTGGACAGCGGCGCGCTCATCAAGATGCGGCGCA
CGCTGGAAGGGGCGGTGAAGTGCGCCTTCCGGTTCTTACGGCGAGAGGAT
GACACCCTGGGGTTGTACTTCA
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