CN185171

Overview
NameCN185171
Unique NameCN185171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.464e-97
Identity = 182/208 (87.50%), Postives = 193/208 (92.79%), Query Frame = 1 
Query:   88 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPT-VNSSQTEQQGGGCAC 708
            MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT++WI+EVRTERG DVI+VLVGNKTDLVDKRQVSIEE + KA+E  VMFIETSAKAGFNIK LFRKIAAALPGMETLSSTKQEDMVDVNLK +  N+S  +QQ GGC+C
Sbjct:    1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANASLAQQQSGGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.037e-92
Identity = 175/214 (81.78%), Postives = 192/214 (89.72%), Query Frame = 1 
Query:   88 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-STKQEDMVDVNLKPTVNSSQTEQQ-----GGGCAC 708
            MASVSPLAK+KLVFLGDQSVGKTSIITRFMYDKFDTTYQ TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA++VYDV+NRQ+FLNTS+WIE+V  ERG  +VIIVLVGNKTDLV+KRQVSI EG+ K KE+GVMFIETSAK  FNIK LFRKIAAALPG+++ S +TK +DMVDVNLK T NSSQ EQQ     GGGC+C
Sbjct:    1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLATKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6A_PONAB (Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 5.055e-82
Identity = 149/203 (73.40%), Postives = 173/203 (85.22%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM+D+ L+       +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6A_HUMAN (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 5.055e-82
Identity = 149/203 (73.40%), Postives = 173/203 (85.22%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM+D+ L+       +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6A_MOUSE (Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4)

HSP 1 Score: 303.908 bits (777), Expect = 6.602e-82
Identity = 149/203 (73.40%), Postives = 172/203 (84.73%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM+D+ L+        E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 1.921e-81
Identity = 147/203 (72.41%), Postives = 172/203 (84.73%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+ AV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM+D+ L+       +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPQEQPVSE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.179e-80
Identity = 144/203 (70.94%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKTDL DKRQ++IEEG+ +AKE  VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L        +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.179e-80
Identity = 144/203 (70.94%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKTDL DKRQ++IEEG+ +AKE  VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L        +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.179e-80
Identity = 144/203 (70.94%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:  100 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 708
            +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKTDL DKRQ++IEEG+ +AKE  VMFIETSAK G+N+K LFR++A+ALPGME +    +E M+D+ L        +E   GGC+C
Sbjct:    9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASE---GGCSC 208
[Close]
BLAST of CN185171 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.428e-78
Identity = 144/198 (72.73%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:  106 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGG 699
            L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA++VYD+ N+ SF NT +WIE+VR ERG +V+I+LVGNKTDL DKRQVSIEEG+ KAKE+ +MF ETSAKAGFNIK LFRK+A+ALPG+++ S TK +  +   +  T       ++G G
Sbjct:    4 LSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQHEIISEVDITDGGKPALKEGDG 201
The following BLAST results are available for this feature:
BLAST of CN185171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBH1B_ARATH1.464e-9787.50Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RBH1C_ARATH7.037e-9281.78Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB6A_PONAB5.055e-8273.40Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6... [more]
RAB6A_HUMAN5.055e-8273.40Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
RAB6A_MOUSE6.602e-8273.40Ras-related protein Rab-6A OS=Mus musculus GN=Rab6... [more]
RAB6A_CHICK1.921e-8172.41Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RAB6B_MOUSE6.179e-8070.94Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN6.179e-8070.94Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN6.179e-8070.94Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
RAB6_DICDI4.428e-7872.73Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006O09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185171 ID=CN185171; Name=CN185171; organism=Citrus sinensis; type=EST; length=793bp
GAGGCTCTCTCTTCTCTTCATTTTCATTTTCATTTGGAAAAAAAAAAAAG
AAAGAGAGATTTGAGATCTATATTGTAAACAAAAAAAATGGCGTCAGTGT
CCCCTTTGGCGAAGTATAAGCTGGTTTTTTTGGGCGATCAATCGGTGGGC
AAAACCAGCATCATCACGCGTTTCATGTACGATAAATTCGACACCACTTA
CCAGGCTACAATTGGGATTGATTTTTTGTCAAAAACTATGTACCTTGAAG
ATCGAACGGTTCGTTTGCAACTTTGGGATACTGCTGGGCAAGAGAGATTT
CGGAGTCTTATTCCAAGCTACATCAGAGATTCTTCTGTGGCAGTAATCGT
CTATGATGTGGCTAATAGGCAATCGTTCTTGAATACTTCTAGGTGGATTG
AGGAGGTTCGTACAGAGCGAGGAGGTGATGTTATCATTGTCCTTGTTGGT
AACAAAACTGATCTTGTTGATAAAAGGCAAGTGTCTATAGAGGAGGGCGA
TGGCAAGGCTAAAGAGTTTGGAGTCATGTTTATAGAAACCAGTGCAAAAG
CAGGATTCAATATTAAGCCTCTCTTTCGGAAGATTGCAGCTGCGTTGCCA
GGAATGGAAACACTTTCCTCCACGAAGCAGGAAGACATGGTGGATGTAAA
CCTAAAGCCGACTGTAAATTCATCTCAGACAGAGCAGCAAGGAGGAGGTT
GTGCTTGTTAAAGAAATGTATTTGAACAAAAAGATAGAGAGAATAGCCAC
AGCCATTGAACCACCCCACAATCGAGCNAATTCAGCTAACATG
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