CN185154

Overview
NameCN185154
Unique NameCN185154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12949 contig Csv1_Contig12949:129..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = -1
Query:  338 IGCVIEVIYLMLYLIYAPQKQKSF-TIKLILVFNVGAFALMMVIVNFFVKGPN-RVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVK-DMVIALPNVLGFLFGIAQMILYLVYKGKKGNESNQKQQE 787
            +G VIE+ Y+ +YL+Y   K+     I   L   V     +++I  F +KG   + T VG +C V+N+A++ AP   + +V+KTKSVEYMPF LS    + A +W  Y L  K D  +   N +G    ++Q+I+Y +Y      E   K  E
Sbjct:   78 VGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEKTVKPSE 230          
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14
Identity = 38/140 (27.14%), Postives = 80/140 (57.14%), Query Frame = -1
Query:  380 IGCVIEVIYLMLYLIYAPQKQ----KSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVY 787
            +G V++ +Y++ YL Y+PQK     ++ T+  +L+   G F L++  +        R+  +G  C+V+ ++++ +PL+ + ++++TKS + + FSL+     C+  W  YG  ++D  I +PN+ G L  + ++ L+  Y
Sbjct:   75 VGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEA------RLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKY 208          
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEBR (RAG1-activating protein 1 homolog OS=Caenorhabditis briggsae GN=CBG13500 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 44/148 (29.73%), Postives = 78/148 (52.70%), Query Frame = -1
Query:  344 IGCVIEVIYLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVYKGKKGNESNQKQ 787
            +G     +Y + +LIY+  K K+FT +LILV        M+V + F    PN +  +G +C  +N+  F APL+ +  V++ + V  +P  +     L ++ W  YG  V+D+ I +PN +G    I Q+ L++V   ++  +S  +Q
Sbjct:   73 VGVFCMAVYCIFFLIYSLPK-KTFTCQLILV--TSTITGMVVWIAF---KPN-LDYLGIICMTFNIMNFGAPLAGLGVVLRNREVSTLPLPMCVANFLVSSQWCLYGNLVQDIYIIIPNGIGMFLAIVQLSLFIVLPRRENEKSPLEQ 213          
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = -1
Query:  380 IGCVIEVIYLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVKGPNRVTAV-GCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVY 787
            IG  + +IY ++Y ++   K ++F  +   V  V   A+++V  N      + +  + G  C +  V  F+APL+ +  VI+ K+ E +P  L     L +  W  YG+ + D  I +PN LG L  + Q+ L++VY
Sbjct:   73 IGSTLFLIYTLIYYVFTVNK-RAFVRQFAFVLAV-LIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLGCLLSMLQLSLFVVY 207          
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEEL (RAG1-activating protein 1 homolog OS=Caenorhabditis elegans GN=K02D7.5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 43/145 (29.66%), Postives = 75/145 (51.72%), Query Frame = -1
Query:  356 IGCVIEVIYLMLYLIYAPQKQKSFTIKLILVFN-VGAFALMMVIVNFFVKGPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILYLVYKGKKGNES 787
            +G      Y + +LIY+  K K+FT +LILV + +G   L + +       PN +  +G +C  +N+  F APL+ +  V+K + V  +P  +     L ++ W  YG  V D+ I +PN +G    I Q+ L++V   ++  +S
Sbjct:   73 VGVACMAFYCVFFLIYSLPK-KTFTCQLILVTSTIGGMVLWIALK------PN-LDYLGVICMTFNIMNFGAPLAGLGVVLKNREVSTLPLPMCVANFLVSSQWCLYGNLVSDIYIIIPNGIGMFLAIVQLALFVVLPIRENEKS 209          
BLAST of CN185154 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 35/134 (26.12%), Postives = 72/134 (53.73%), Query Frame = -1
Query:  389 IGCVIEVIYLMLYLIYAPQKQKSFTIKLILVFNVGAFALMMVIVNFFVK-GPNRVTAVGCVCAVYNVAVFSAPLSIMRRVIKTKSVEYMPFSLSFFLTLCATMWFFYGLFVKDMVIALPNVLGFLFGIAQMILY 787
            IG  ++ +Y+  Y  Y  +K++ +T  L++V       +  V  +  +  G  +++ +G  C+V+ ++++ +PL+ +  +++TKSVE + FSL+      +T W  YGL + D  I +PN  G    + +  L+
Sbjct:   71 IGAFLQTVYIATYCHYTKEKRRVYTQTLLMV---SVLCVAWVYFSLVISPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPGIFTSLIRFFLF 201          
The following BLAST results are available for this feature:
BLAST of CN185154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPG1_ARATH2.788e-1634.64Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_MOUSE1.530e-1427.14RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_CAEBR5.440e-1229.73RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]
R1AP1_DROPS9.280e-1229.20RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_CAEEL9.280e-1229.66RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]
R1AP1_DANRE1.583e-1126.12RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185154 ID=CN185154; Name=CN185154; organism=Citrus sinensis; type=EST; length=787bp
GAGGATTAACTTGAGTTGTCACCACAAGTAAACTGGAACTTACATAGATG
TAAATATGATACCAAACACAATATTATATAAAAGAGGAACTTATATATTG
TACTGTTTCACATTTCTCAATCTTAAATTAATCCTTTGTCCCATCCATGA
AAATTAGAAGACATAATTAAACCACAGCATGCATGGATTTTTTTTATCAG
ACATTCGCGTTTAATTCCAAGCTCCTTCGTTGAAACAAAACCTTCATCTG
TCAGTTGGTTTGAAGATCTGTAGGTTGATTATTGTCTTTTGTGTAAGCTT
TGTCATCTTCAGTCAAGTTCATTTTCATTTCTGTACACTCTTGCTGCTTT
TGATTTGATTCATTGCCCTTCTTGCCCTTGTATACGAGGTATAGGATCAT
TTGGGCAATCCCAAATAAAAATCCTAAGACGTTTGGTAAAGCAATGACCA
TGTCCTTGACAAAAAGTCCGTAAAAGAACCACATGGTGGCGCAGAGGGTG
AGGAAAAATGAAAGAGAAAATGGCATATACTCAACACTCTTGGTCTTAAT
CACCCGCCTCATGATGCTTAAAGGAGCAGAGAACACAGCAACGTTGTAGA
CAGCGCAGACACAACCAACGGCAGTGACTCGATTAGGCCCCTTTACGAAA
AAATTGACGATCACCATCATCAAGGCAAAGGCTCCAACGTTAAACACGAG
TATCAACTTGATTGTGAAACTCTTCTGCTTTTGGGGTGCGTATATGAGGT
AGAGCATTAGGTAAATAACTTCTATAACACATCCAAT
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