CN185143

Overview
NameCN185143
Unique NameCN185143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185143_ssr6 microsatellite CN185143_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2572 contig Csv1_Contig2572:21..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.688e-60
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 458
            M FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLKRE AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.989e-60
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 458
            M FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLK+E  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.801e-55
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENA 455
            MPFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLK+  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.918e-27
Identity = 61/132 (46.21%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+RYVE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+R+VE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+R+VEIGRVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK ++  KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL++
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 443
            M F R+VE GRVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V   +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 5.658e-26
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CN185143 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.150e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   57 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKR 446
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CN185143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL141_ARATH2.688e-6088.0660S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH5.989e-6087.3160S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA5.801e-5579.70Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE3.918e-2746.2160S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT1.140e-2645.4560S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU1.489e-2646.9760S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_GRIJA2.540e-2650.0060S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_HUMAN5.658e-2643.9460S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.646e-2543.9460S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN2.150e-2543.9460S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185143 ID=CN185143; Name=CN185143; organism=Citrus sinensis; type=EST; length=624bp
GAGGCTCATTCATTCATCTCCTCGCTCCTCCGGCAGAGCCTTGAATATCT
TCGAAAATGCCGTTCAAGAGGTACGTGGAGATAGGAAGAGTTGCTCTCGT
TAATTACGGGAAGGACTATGGGAAGCTTGTGGTCATCGTCGATGTCCTTG
ATCAAAACAGGGCTCTTGTTGATGCCCCTGATATGGTGAGGAGCCAAATG
AACTTCAAGAGGCTTTCTCTCACGGATATTAAGATTGACATCAATCGAGT
TCCCAGGAAGAAGTCTTTGATTGAAGCCATGGAGAAGGCTGATGTGAAGA
ACAAATGGGAAAACAGCTCCTGGGGCAGGAAGCTGATTGTCCAGAAAAGG
AGAGCGGCACTGAATGATTTTGATAGGTTCAAGCTCATGTTGGCCAAGAT
CAAGAAGGGTGGACTTGTTCGACAGGAGCTTGCAAAACTCAAGAGGGAGA
ATGCAGCATAGAATTTCTCTCGTGTTCCCCTTTCTGGTTTTTAGTTCTTA
CAGCTTCAATTTGATTCTATTAATGTATTGATTAATATGAGAAAACATCA
GCTTGGCGTTTTTGGGTTAATTGTTATTTGGACAGAATTTTTAGATATTT
TCGTAATGTCCTTTCTGTTATAAA
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