CN185142

Overview
NameCN185142
Unique NameCN185142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2572 contig Csv1_Contig2572:228..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185142 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.923e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = -3 
Query:  161 NIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 394
            +I IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLKRE AA
Sbjct:   57 DIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134
[Close]
BLAST of CN185142 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.014e-31
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = -3 
Query:  161 NIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA 394
            +I IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLK+E  A
Sbjct:   57 DIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134
[Close]
BLAST of CN185142 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.343e-26
Identity = 57/77 (74.03%), Postives = 66/77 (85.71%), Query Frame = -3 
Query:  164 NIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENA 394
            ++KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLK+  A
Sbjct:   57 DLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133
The following BLAST results are available for this feature:
BLAST of CN185142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL141_ARATH5.923e-3287.1860S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH5.014e-3184.6260S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA6.343e-2674.03Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185142 ID=CN185142; Name=CN185142; organism=Citrus sinensis; type=EST; length=411bp
TTTTAAAGAAAGGTTTTACAAAAATCTAAAAATTCTGTCCAATAACAATT
AACCCAAAAACGCCAAGCTGATGTTTTCTCATATTAATCAATACATTAAT
AGAATCAAATTGAAGCTGTAAGAACTAAAAACCAGAAAGGGGAACACGAG
AGAAATTCTATGCTGCATTCTCCCTCTTGAGTTTTGCAAGCTCCTGTCGA
ACAAGTCCACCCTTCTTGATCTTGGCCAACATGAGCTTGAACCTATCAAA
ATCATTCAGTGCCGCTCTCCTTTTCTGGACAATCAGCTTCCTGCCCCAGG
AGCTGTTTTCCCATTTGTTCTTCACATCAGCCTTCTCCATGGCTTCAATC
AAAGACTTCTTCCTGGGAACTCGATTGATGTCAATCTTAATATTCCGTGA
AAGAAAGCCTC
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