CN185130

Overview
NameCN185130
Unique NameCN185130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit Tim9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.960e-40
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1
Query:   10 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 288
            MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQEETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct:    1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.189e-37
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 1
Query:   10 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 288
            MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSLVERCF DCVD F RKTL KQEE+CV RCAEKFLKHSMRVGMRFAELN   AT +
Sbjct:    1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.706e-37
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1
Query:   10 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 288
            MDKNML  LD LPE+DK +MA+MI+ LQ+RDSLRMYN+LVERCF DCVD+F RKTL KQEETCV RCAEKFLKHSMRVG+RFAELN  AAT +
Sbjct:    1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.907e-19
Identity = 39/79 (49.37%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++   + +I+H Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+ RC+EKFLKHS RVG+RF E N+
Sbjct:    1 MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.464e-19
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+TC+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae GN=TIM9 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.754e-18
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica GN=TIM9 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.012e-18
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++     +++  Q++D +R+Y+SLV+RCF DCV++FT K L  +EE+C+ +C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis GN=TIM9 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.367e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+ C+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.785e-17
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   34 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 270
            +D L  +++     +++  Q++D +R+Y+ LVERCF DCV++FT   L  +EE+C+++C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CN185130 vs. ExPASy Swiss-Prot
Match: TIM9_CRYNE (Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans GN=TIM9 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   55 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 273
            ++A M+ +I+  Q++D +R+Y+ LVE+CFN C  +FT K L   E TCV  C +KFLKHS RVG RFAE N++
Sbjct:   10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAE 82          
The following BLAST results are available for this feature:
BLAST of CN185130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_ARATH1.960e-4083.87Mitochondrial import inner membrane translocase su... [more]
TIM9_ORYSJ1.189e-3779.57Mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR7.706e-3777.42Mitochondrial import inner membrane translocase su... [more]
TIM9_ZYGBA1.907e-1949.37Mitochondrial import inner membrane translocase su... [more]
TIM9_ASHGO9.464e-1948.10Mitochondrial import inner membrane translocase su... [more]
TIM9_YEAST2.754e-1846.84Mitochondrial import inner membrane translocase su... [more]
TIM9_YARLI8.012e-1846.84Mitochondrial import inner membrane translocase su... [more]
TIM9_KLULA1.367e-1746.84Mitochondrial import inner membrane translocase su... [more]
TIM9_CANGA1.785e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_CRYNE1.511e-1650.68Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185130 ID=CN185130; Name=CN185130; organism=Citrus sinensis; type=EST; length=454bp
GAGGCCGGAATGGACAAGAACATGTTGGCTGGACTTGACGGTCTTCCCGA
ACAGGACAAGGCCAGAATGGCTGCCATGATCGACCATCTTCAATTACGGG
ACAGTTTGAGGATGTACAACTCCCTTGTGGAGAGATGTTTCAACGATTGT
GTGGACAACTTTACACGCAAGACCCTACAGAAGCAAGAGGAGACCTGCGT
CATGCGTTGTGCTGAGAAATTTCTGAAGCACTCAATGCGCGTTGGTATGA
GGTTTGCAGAACTCAATTCACAAGCAGCTACACAAGAATAGTATCCCCAG
ACGACCATTAACGGCGCCAAGAAACCATTTGGTTTATTCCTGTAGAATTT
CTTTTGGATCAAATTAGTGGCTATTAATTTTCTGCTTTTGCCATCAGTGG
AAGCCCAAGTTTGCGGTAGGATTCATAATCATCGTCTGAAAAAAAAAAAA
AAAA
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