EY666516

Overview
NameEY666516
Unique NameEY666516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.710e-44
Identity = 86/125 (68.80%), Postives = 108/125 (86.40%), Query Frame = 3
Query:  111 ISVLTLTIATLLFWASFSGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLLGIAAS 485
            IS++ L +A + F +  S A A S EA FV+KT+SSHKIVIFSKSYCPYC++AKSVF+EL+  P+VVELDER+DGW+IQ ALGE+VGRRTVPQVFINGKH+GGS DTV+AYESG+LA+LLG++ +
Sbjct:    7 ISMVMLLVALVTFISMVSSA-ASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSGN 130          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 9.754e-39
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 3
Query:  162 SGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMA--PHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLLGI 476
            S AS  +S+++FV+ TV +H +VIFSKSYCPYCRRAK+VFKEL +   P+VVELD+R+DGW IQDAL +MVGRRTVPQVF++GKH+GGS DTVEAYESGKLA+LL I
Sbjct:   24 SAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNI 130          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  162 SGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL 470
            + A A +S +AFV+  + S+KIVIFSKSYCPYC R+K +F +L   P VVELD+R+DG  IQ  L E VGRRTVPQVF+NGKHIGGS D   A ESG+L +LL
Sbjct:   25 NSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.012e-27
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  114 SVLTLTIATLLFWASFSGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLLGIAAS 485
            + + + +  LL  A    A+A  S +AFV+  + S++I IFSK+YCPY  RAK +F++L   P++VELD R+DG  IQ  L ++VGR TVPQVF+NG+H+GGS DT  A+ +G+L +LLG + S
Sbjct:    6 AAVPIAVFLLLVLAEADPAAATRSPSAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNSQS 129          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  192 AFVEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL----GIAASGK 491
            A  ++TV+S  +V++SKSYCP+C R K +F++L      +ELD   DG  +Q AL E  G+RTVP VFINGKHIGG  DT+     GKL  LL     IA+S K
Sbjct:    4 AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSAK 107          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  198 VEKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL 470
            V+  + +HK++IFSK+ CPYC   K +FK+L + P VVELD   DG  +Q A G++ G RTVPQVFIN K IGG   T + +  GKL  LL
Sbjct:    4 VKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLL 94          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  201 EKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLLGIAASGK 491
            ++ VSS+ +V+FSK++CPYC   K +  +L     V+ELD   DG ++Q+AL E  G+RTVP VFI GKHIGG   T   ++ GKL  LL  A + K
Sbjct:    7 QELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAVK 103          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.912e-18
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  201 EKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL 470
            ++ VSS+ +V+FSK+YCPYC   K +  +L     VVELD   DG  IQ AL E  G+RTVP VFI GKHIGG   T   +  G+L  LL
Sbjct:    7 KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLL 96          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.267e-18
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  159 FSGASAKSSEAAFV----EKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL 470
            FSG      E   V    ++ VS++ +V+FSK+YC YC+R K +  +L     V+ELDE  DG  IQ AL E  G+ TVP VFI G HIGG    +E  + GKL  LL
Sbjct:    5 FSGNRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112          
BLAST of EY666516 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  201 EKTVSSHKIVIFSKSYCPYCRRAKSVFKELNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSHDTVEAYESGKLAQLL 470
            ++ V+S  +V+FSK+YCP+C R K +  EL  +   VELD   DG  +Q AL +  G+RTVP VFI GKHIGG  DT+  ++ G L  LL
Sbjct:   33 KEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLL 122          
The following BLAST results are available for this feature:
BLAST of EY666516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC4_ARATH7.710e-4468.80Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ9.754e-3971.03Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ARATH2.662e-2861.17Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ1.012e-2747.58Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC6_ORYSJ1.564e-2049.04Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_DICDI2.950e-1950.55Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX_VERFO6.573e-1946.39Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_RICCO1.912e-1850.00Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC1_ARATH7.267e-1844.44Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GRXC4_ORYSJ9.491e-1847.78Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666516 ID=EY666516; Name=EY666516; organism=Citrus sinensis; type=EST; length=831bp
CACGCGTCCGAAAAATATCTAAAAAACCCACTCCGCTGCCTGCACCTCTT
CTGCGCGGTCTCCGGTGCAGCATCAGACTCATCATGACGGCGAGAAGACT
AACACCAATGATCTCAGTACTAACGTTAACGATTGCGACGCTTCTCTTCT
GGGCATCATTTTCCGGAGCTTCTGCCAAATCTTCAGAAGCTGCTTTTGTC
GAAAAGACTGTCTCTTCCCACAAGATCGTCATCTTCTCCAAGTCTTATTG
CCCATATTGTAGGAGGGCTAAATCTGTATTCAAAGAGTTGAACATGGCTC
CTCATGTAGTCGAGCTTGATGAGAGAGATGATGGCTGGAACATTCAGGAT
GCCTTGGGTGAGATGGTTGGGCGGCGCACTGTACCACAGGTGTTCATAAA
TGGAAAGCACATTGGAGGCTCACATGATACTGTTGAAGCTTATGAAAGTG
GGAAACTAGCTCAGCTTTTAGGTATTGCAGCAAGCGGCAAAGATGATCTC
TAATTGCTTCGAGATCAATGCCAATTGGGGATCTTGTCTAAAAGCTTTTT
GATGCACTGCTCTGAAGAACGAAGGATGATCTCTGAGGCAATAATAGGAT
TTCTATTATTAGTATTCAGGGGAAGTACTTGGTTGTGTAAATCTTTTTCT
TTTCCCTGGAAATAAATTAGGGAATATACCTTAATCCTAAATAGTCCCCC
GTTATCAAATTTTAACCGATTCCCCGGCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAATGGGGGGGCGCCCTCAAAAGGAATTCCACGTTTTCCTCAG
GCGGGGCTCGCGCCAGTCTTTACCTTCTCTT
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