DC887678

Overview
NameDC887678
Unique NameDC887678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.687e-59
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNKCDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  IYKKIQDGVFDVSNES
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.687e-59
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML+GNKCDL+HRRAVS EEGEQFAKEHGLIFMEASAKTAQNVEEAF+KTA  IYKKIQDGVFDVSNES
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNES 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.023e-56
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NMTIMLIGNKCDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IYKKIQDGVFDVSNES
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNES 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.023e-56
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN NMTIMLIGNKCDL HRRAV+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IYKKIQDGVFDVSNES
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNES 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.335e-49
Identity = 95/118 (80.51%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQDGVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEA 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
[Close]
BLAST of DC887678 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -1 
Query:  308 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNES 661
            QESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+
Sbjct:   65 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
The following BLAST results are available for this feature:
BLAST of DC887678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
RAB2B_MAIZE5.687e-5994.92Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_MAIZE5.687e-5994.92Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPTV4_VOLCA2.023e-5691.53GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.023e-5691.53GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2_LYMST5.335e-4980.51Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT9.100e-4979.66Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT9.100e-4979.66Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB9.100e-4979.66Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE9.100e-4979.66Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA9.100e-4979.66Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887678 EIC Citrus sinensis cDNA clone EIC0721 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887678 ID=DC887678; Name=DC887678; organism=Citrus sinensis; type=EST; length=661bp
ACTTCATTGAACTATAAAGGCGTCAGCACAACTCTCACATTTACAGTCAA
ACAGACAGAACATCAGGAAAGATTATACAGAAACCAAACAATTCTGAATT
TGCACGTATAAACAAGTGACAAATAACCAAAGAAAAAAGAACATTGAAGA
ATATTATAAACCATAGGCAAATAAACAGGCTCCAATCAAGTTGGTAAAAT
AGCATATCCTCAACTCTCAACTGCAACAACCTCCAGCTTGAGAAGAAGAG
CCATCTCTGCCTCCCGATGGCCCGGGTATTCCTCCATATCCAACCTTTAT
GCCATAGGGACTCATTCGATACATCAAAAACTCCATCCTGAATTTTCTTG
TATATTGTTGCAGCAGTTTTTATAAATGCCTCCTCAACATTCTGAGCAGT
TTTTGCAGAGGCTTCCATGAAGATCAATCCATGCTCCTTTGCAAACTGCT
CACCTTCCTCCGTACTCACAGCCCTTCTATGAGCAAGATCACACTTGTTA
CCAATGAGCATAATAGTCATGTTTGCATTTGCATGCTGCCTTGCATCCTC
CAGCCAGCTAGCCAAGTGATTAAAAGTTTCCCTCCTGGTAATATCATAGA
CAAGTAATGCACCAGCAGCCCCTCTATAGTAAGACCTGGTAATAGATCTG
AAGGATTCTTG
back to top