CN185112

Overview
NameCN185112
Unique NameCN185112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185112_ssr69 microsatellite CN185112_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:25..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185112 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 442.195 bits (1136), Expect = 1.553e-123
Identity = 206/221 (93.21%), Postives = 214/221 (96.83%), Query Frame = 3
Query:  132 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMG 794
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP ERNTRFVDA++TIPKG+LFPMCGMNL FNRELIGPAMYFGLMG
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMG 229          
BLAST of CN185112 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 441.425 bits (1134), Expect = 2.649e-123
Identity = 206/223 (92.38%), Postives = 214/223 (95.96%), Query Frame = 3
Query:  126 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMG 794
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMG
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKPHERNTRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMG 226          
BLAST of CN185112 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 439.499 bits (1129), Expect = 1.007e-122
Identity = 205/224 (91.52%), Postives = 215/224 (95.98%), Query Frame = 3
Query:  123 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMG 794
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP ERN R+VDA+MTIPKGTLFPMCGMNL F+R+LIGPAMYFGLMG
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKPKERNERYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMG 236          
BLAST of CN185112 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 434.876 bits (1117), Expect = 2.480e-121
Identity = 203/221 (91.86%), Postives = 211/221 (95.48%), Query Frame = 3
Query:  132 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAIMTIPKGTLFPMCGMNLGFNRELIGPAMYFGLMG 794
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP ERNTR+VDA+MTIPKGTLFPMCGMNL F+RELIGPAMYFGLMG
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMG 230          
The following BLAST results are available for this feature:
BLAST of CN185112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_PEA1.553e-12393.21Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU2.649e-12392.38Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE1.007e-12291.52Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU2.480e-12191.86Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006M07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185112 ID=CN185112; Name=CN185112; organism=Citrus sinensis; type=EST; length=794bp
GAGGCTATCGCTCCTCTCCTCCTGTTCTTCTTCTTACACAAATCAAAGTC
TCTCATTTTTCTTTTTCCTTCTTTCTTTCTTTTTTCTGAAACAAAATGGC
GGCGGCAGCAACGACAACAAGGCCGGCTGTGCCGCTGCTGAAAGACGAGC
TGGACATCGTGATCCCCACGATCCGAAACTTGGACTTCTTGGAGCAGTGG
AGGCCGTTTTTTCAGGCCTATCATTTGATCATCGTTCAGGATGGTGACCC
TTCGAAGACCATCAAAGTCCCTGAGGGATTTGACTACGAGCTCTATAATC
GTAACGATATTAACCGGATTCTGGGTCCCAAGGCTTCTTGCATATCCTTC
AAGGACTCTGCCTGCAGGTGCTTTGGCTACATGGTGTCCAAGAAGAAGTA
TGTTTACACCATTGATGACGATTGCTTTGTTGCTAAAGACCCATCTGGCA
AAGAAATTAATGCACTGGAGCAGCACATAAGGAACCTGCTGAGTCCATCC
ACCCCATTTTTCTTTAACACTCTGTACGACCCATACCGTGATGGAGCTGA
CTTCGTTCGCGGATATCCGTTCAGTCTTCGTGAGGGTGTCCCCACTGCTG
TTTCTCATGGCCTCTGGCTCAACATCCCAGATTATGATGCTCCCACCCAG
CTTGTCAAGCCTCTTGAGAGGAACACTAGGTTTGTGGATGCAATTATGAC
AATACCAAAGGGAACCCTCTTCCCCATGTGTGGTATGAATCTGGGATTCA
ACCGTGAATTGATCGGTCCTGCAATGTACTTCGGACTCATGGGT
back to top