CN185111

Overview
NameCN185111
Unique NameCN185111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185111_ssr5 microsatellite CN185111_ssr5:5..18. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185111_ssr181 microsatellite CN185111_ssr181:181..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10410 contig Csv1_Contig10410:3..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A_TOBAC (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.851e-80
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 1
Query:  217 VPSN-SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            VPS+ SHGNLDEQIAQLMQCKPLSEQEVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLF  F
Sbjct:    4 VPSSASHGNLDEQIAQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYF 156          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.541e-78
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 1
Query:  217 VPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            +P+++  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF  F
Sbjct:    6 LPTDATLDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVGLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYF 157          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.253e-77
Identity = 137/152 (90.13%), Postives = 146/152 (96.05%), Query Frame = 1
Query:  217 VPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            +P+++  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGG CPDTNYLFMGDYVDRGYYSVETVTLLV+LK+RYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF  F
Sbjct:    6 IPTDATIDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDRGYYSVETVTLLVALKMRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYF 157          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A_BRANA (Serine/threonine-protein phosphatase PP2A catalytic subunit (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 6.556e-77
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 1
Query:  217 VPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF 663
            +P+++  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGG CPDTNYLFMGDYVDRGYYSVETVTLLV LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLF
Sbjct:    2 IPTDATLDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDRGYYSVETVTLLVGLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLF 150          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSJ (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.461e-76
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 1
Query:  223 SNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            S+ HG LD+QI +LMQCKPL E EVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLF  F
Sbjct:    2 SSPHGGLDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYF 151          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSI (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A2 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.461e-76
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 1
Query:  223 SNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            S+ HG LD+QI +LMQCKPL E EVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLF  F
Sbjct:    2 SSPHGGLDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYF 151          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A5_TOBAC (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.250e-76
Identity = 135/152 (88.82%), Postives = 143/152 (94.08%), Query Frame = 1
Query:  217 VPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            V ++  GNLDEQI+QLMQCKPLSE +VR LCEKAKEIL +ESNVQPVKSPVTICGDIHGQFHDLAELFRIGG+CPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQR+TILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLF  F
Sbjct:    7 VAASIQGNLDEQISQLMQCKPLSEPDVRALCEKAKEILAEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGQCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYF 158          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa GN=PP2A PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.550e-76
Identity = 135/145 (93.10%), Postives = 142/145 (97.93%), Query Frame = 1
Query:  238 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            +L+EQI+QLMQCKPLSEQ+V+ LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLF  F
Sbjct:   13 DLNEQISQLMQCKPLSEQQVKELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFF 157          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.332e-74
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 1
Query:  235 GNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            G LD QI QLM+C+PLSE EV+ LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDL ELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLF  F
Sbjct:   13 GGLDAQIEQLMECRPLSEPEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYF 158          
BLAST of CN185111 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSI (Putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A4 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.332e-74
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 1
Query:  235 GNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLF*LF 672
            G LD QI QLM+C+PLSE EV+ LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDL ELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLF  F
Sbjct:   14 GGLDAQIEQLMECRPLSETEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYF 159          
The following BLAST results are available for this feature:
BLAST of CN185111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP2A_TOBAC4.851e-8094.77Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A3_ARATH4.541e-7891.45Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A4_ARATH2.253e-7790.13Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A_BRANA6.556e-7791.28Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A2_ORYSJ1.461e-7690.67Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A2_ORYSI1.461e-7690.67Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A5_TOBAC4.250e-7688.82Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP2A_MEDSA5.550e-7693.10Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A4_ORYSJ2.332e-7490.41Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A4_ORYSI2.332e-7490.41Putative serine/threonine-protein phosphatase PP2A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006M06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185111 ID=CN185111; Name=CN185111; organism=Citrus sinensis; type=EST; length=687bp
GAGGCTCTCTCTCTCTCTAAACACTGAAGCCTTCTCTCTTTTTTTTTTTA
AAATTTTTTTTTGAGATACAAAATTGAATTTTGATTATAGGGTTTCGAAA
AAATTAGGGTTTGTTTGTTGAAATTTAGGGTTAGGGTTAGATTAAAAAGA
GGAAAGTGAAGGGATCTGAGTCTGCAAATTAAGAAGAAGAAGGACAAGAA
AATGAGCTTGGATTCGGTCCCTTCAAATTCACATGGAAATCTCGACGAGC
AGATTGCTCAGCTTATGCAGTGCAAGCCCTTATCGGAACAAGAGGTTAGA
GTGTTATGCGAAAAGGCCAAGGAGATATTGATGGATGAAAGTAATGTCCA
GCCTGTAAAAAGTCCTGTTACAATTTGTGGTGATATTCATGGACAATTTC
ATGATCTTGCAGAGCTTTTCCGCATTGGAGGAAAGTGTCCAGATACAAAC
TACTTGTTCATGGGAGATTATGTTGACCGTGGTTACTATTCAGTAGAAAC
TGTTACGCTTTTGGTATCTCTGAAAGTGCGTTATCCTCAAAGGATTACTA
TTCTAAGGGGGAATCATGAAAGTCGTCAGATTACTCAGGTCTATGGATTC
TATGATGAGTGCCTTAGGAAGTACGGCAATGCCAATGTTTGGAAGATATT
CACAGATTTATTTTGACTATTTTCCACTGACAGCATT
back to top