CN185106

Overview
NameCN185106
Unique NameCN185106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185106 vs. ExPASy Swiss-Prot
Match: GRXC9_ARATH (Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.900e-21
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = -1
Query:  108 PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 314
            PAV E+ +  E  VL EL  I V+ GGG ++ PAV+VGG+LFGGLDRVMATHISG+LVPILKE GALWL
Sbjct:   69 PAVLEIDEEREDEVLSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGALWL 137          
BLAST of CN185106 vs. ExPASy Swiss-Prot
Match: GRXS9_ORYSJ (Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica GN=GRXS9 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.798e-15
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  108 PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 314
            PAV EVA   E A         V  GGG +  PAVFVGG+L GGLDR+MA HISG+LVPILKEAGALWL
Sbjct:   72 PAVHEVAGEAELA--------GVVAGGGGVALPAVFVGGRLLGGLDRLMAVHISGELVPILKEAGALWL 132          
BLAST of CN185106 vs. ExPASy Swiss-Prot
Match: GRXS3_ORYSJ (Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. japonica GN=GRXS3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.162e-14
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  108 PAVFEVAD-GDEAAVLD------------ELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 314
            PAV EV D  D AA++D            + +      GG  + FPAVF+GG+L GGLDR+MA H++G+LVP+LK+AGALWL
Sbjct:   55 PAVLEVGDDADPAALVDAALQARRRKDGGDKAAAGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136          
BLAST of CN185106 vs. ExPASy Swiss-Prot
Match: GRXS5_ORYSJ (Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. japonica GN=GRXS5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.222e-13
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = -1
Query:  108 PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 314
            PAV EVA   EAA+        V  GG     PAVFVGGKL GGLDR+MA HISG+LVPILK+AGALWL
Sbjct:   86 PAVHEVAG--EAALKGV-----VPAGGEAAALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147          
BLAST of CN185106 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = -1
Query:  108 PAVFEVADGDEAAVLDE-LSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 314
            PAV E+        L+  L+R+    G      P VF+GGKL G +DRVMA HI+G LVP+LKEAGALWL
Sbjct:   66 PAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
The following BLAST results are available for this feature:
BLAST of CN185106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GRXC9_ARATH7.900e-2168.12Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 P... [more]
GRXS9_ORYSJ3.798e-1563.77Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. j... [more]
GRXS3_ORYSJ7.162e-1448.78Monothiol glutaredoxin-S3 OS=Oryza sativa subsp. j... [more]
GRXS5_ORYSJ1.222e-1363.77Monothiol glutaredoxin-S5 OS=Oryza sativa subsp. j... [more]
GRXC5_ORYSJ1.950e-1151.43Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185106 ID=CN185106; Name=CN185106; organism=Citrus sinensis; type=EST; length=314bp
TTGATATTGATCCATAGAAGAATTACATGGTCTACATAACTACATTCATC
AAAGACAGAAAGGAAATCGAGATAAAATTAATGGAGGAAGAGGCAGAGGA
TAGATCATAGCCACAAAGCCCCGGCCTCTTTCAAAATAGGCACCAAATCG
CCGGAAATATGTGTAGCCATTACCCGATCCAATCCACCAAACAACTTCCC
TCCGACAAAAACGGCCGGAAATTGTATAATCCCACCACCGTTTTCGACAT
CAATTCTCGACAATTCATCAAGAACAGCAGCTTCATCACCATCGGCCACC
TCGAACACCGCAGG
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