EY666509

Overview
NameEY666509
Unique NameEY666509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY666509 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 41/137 (29.93%), Postives = 73/137 (53.28%), Query Frame = 1 
Query:   10 IFKLLGEQTDIANRAGDISLWFIGILYFFVFSLTIQKYLQAQLKNMIVGWLSAVAFVVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVY-LFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMIW*DIHF 417
            I K +G+   IA+     +   I  +Y F  +  +Q++LQAQ     + ++S   F++H  L+W+  + L+ G+ GA   +  + W +V    +Y L    C  TW GFS+ AF  ++P  KL+++S VM+  +I +
Sbjct:  157 ILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWY 293
The following BLAST results are available for this feature:
BLAST of EY666509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH4.237e-1329.93Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666509 ID=EY666509; Name=EY666509; organism=Citrus sinensis; type=EST; length=848bp
GCAGCAGATATTTTCAAACTGCTCGGAGAACAAACAGACATAGCAAACAG
AGCCGGAGACATCTCACTTTGGTTCATTGGCATTCTCTATTTCTTTGTCT
TCAGCTTAACGATCCAAAAGTACTTGCAAGCACAGCTCAAGAACATGATT
GTCGGATGGCTTTCGGCTGTTGCATTTGTTGTTCATGTGGCCTTGTCATG
GATCTTTGTGAGCAAATTGAACTTGGGGATTCCTGGTGCAATGAGTGCAA
TGATAATCGCAAGTTGGTTTATAGTAATTGGACAGTTTGTGTATCTCTTT
GGCGGTTGGTGTCCCAATACATGGAAAGGATTCAGTTCTGCAGCTTTTGC
TGATTTGTATCCTGTTTTGAAGCTCTCAATATCCTCAGGTGTAATGATTT
GGTAAGATATCCATTTCTATTGTATATCTATAGCCGAACAATATATCTAT
TTAATGTTTTAATCTGTCCCCATGAAGTTAGCCCAAGAGTTTTCAAACAG
ATTTTTTTTTTTTTTTTTTTGAGCTAATCATATCTTTTTATGTTCTTTTT
TGGTGGCTTTTAACTTTAATAATAATAGCCTAGAGTTTTGGTACAATGCT
CTTCTAGTCCTATTAGCAGGATATATGAAAAATGCCACAATTGAGATTTC
TTCCTTCTCCATTTGCCTCAACATCCTATCGTGGGGATTTTATGTNGGGC
TTTGGCTTTCTAACTGCCTCTGGGTGGGCGGGGTTTCAAATGAAACTGGG
GAAAAGGAGAAGGGTAAAGCTGGCGAAATTTTCTTGAAAAAAGTTGGCAA
TAACTTACCCCAAATTGGCCATTTGGATTTTTTCCTTTTCCCTTAAAT
back to top