CN185082

Overview
NameCN185082
Unique NameCN185082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 1.498e-88
Identity = 159/179 (88.83%), Postives = 161/179 (89.94%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 1.498e-88
Identity = 159/179 (88.83%), Postives = 161/179 (89.94%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 4.359e-88
Identity = 158/179 (88.27%), Postives = 160/179 (89.39%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM SDKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 4.359e-88
Identity = 158/179 (88.27%), Postives = 160/179 (89.39%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 7.435e-88
Identity = 160/179 (89.39%), Postives = 160/179 (89.39%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNA WELYCLEHGIQPDGQM SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAV  X              VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNARWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGXTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA2_HORVU (Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 9.711e-88
Identity = 157/179 (87.71%), Postives = 160/179 (89.39%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKL+DNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.268e-87
Identity = 157/179 (87.71%), Postives = 159/179 (88.83%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.268e-87
Identity = 157/179 (87.71%), Postives = 159/179 (88.83%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.268e-87
Identity = 157/179 (87.71%), Postives = 159/179 (88.83%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 2.163e-87
Identity = 156/179 (87.15%), Postives = 160/179 (89.39%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKL+DNCTGLQGFLVF+AV                 VDYG+KSKLGFTVYPSPQVST
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTVYPSPQVST 179
The following BLAST results are available for this feature:
BLAST of CN185082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
TBA4_GOSHI1.498e-8888.83Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI1.498e-8888.83Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_ARATH4.359e-8888.27Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_PEA4.359e-8888.27Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_ANEPH7.435e-8889.39Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA2_HORVU9.711e-8887.71Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 ... [more]
TBA_PRUDU1.268e-8787.71Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA6_ARATH1.268e-8787.71Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA3_HORVU1.268e-8787.71Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA_WHEAT2.163e-8787.15Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185082 ID=CN185082; Name=CN185082; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCAAATCTCTAACAAAATCACACAAGAATGAGAGAATGCATCTCA
ATTCACATCGGCCAGGCCGGTATCCAGGTTGGTAATGCCTGCTGGGAGCT
CTATTGCCTCGAACATGGCATTCAGCCTGATGGGCAAATGTTAAGTGACA
AAACAGTCGGAGGCGGAGATGATGCTTTCAACACATTCTTCAGTGAGACC
GGCGCCGGAAAGCACGTGCCACGCGCCGTGTTTTTGGACCTTGAACCAAC
TGTAATCGATGAAGTGAGGACTGGCGCCTACCGTCAGTTATTTCACCCGG
AGCAACTCATTAGCGGCAAAGAAGATGCTGCTAACAACTTTGCCAGAGGT
CACTACACAATTGGGAAAGAGATTGTGGATTTGTGCCTTGATAGGATCAG
GAAGTTAGCTGATAACTGTACCGGTCTACAAGGGTTCCTCGTGTTCCACG
CGGTTGGTGGAGGAACAGGATCCGGGCTCGGGTCTTTGCTCCTTGAGAGG
CTGTCTGTTGATTACGGCAAGAAATCGAAACTGGGATTTACCGTTTACCC
TTCACCTCAAGTTTCAACCT
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