DC887659

Overview
NameDC887659
Unique NameDC887659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9914 contig Csv1_Contig9914:462..1177. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887659 vs. ExPASy Swiss-Prot
Match: Y4645_ARATH (Uncharacterized protein At4g26450 OS=Arabidopsis thaliana GN=At4g26450 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.063e-40
Identity = 100/222 (45.05%), Postives = 136/222 (61.26%), Query Frame = -3 
Query:    1 PPPPTPRK---GDIFMEAGRLAAEYLVSQGLLPSSVLSGKSQNGNFRSLDGDGMQLPSEGRTSALTRLGNSGSDVESGRRRYPDDYNSMGLGNYLKGRRKGSFRSYGSDWGREYGRTGSWSERNKISPDVEGDDDSYSGHQEEQRLGKDVDNGLQKAGTGGFAPKSEEAGSIEAESDKHNVLDVMGSRVSSSSNGKDLLKETDGEFSRKAVESTNMNVETGE 657
            PPPP  R+   GD+FMEAGRLA EYLVSQG+LP +VLS K QNGNFR   G+        R+    R+  S    E  +RRY D Y+S G  N LKGRR   + S       ++GR+GSWSER+K   + E  DDS SGHQEEQ L +D+ + +Q++ +G F  K E AG  E+  DK+N+ D   S+  SSS GKD+++  D E S+ +  S++++  +GE
Sbjct:   70 PPPPVQRRSSGGDVFMEAGRLATEYLVSQGVLPQTVLSSKWQNGNFRKQAGEFQS----SRSQEEARMDVSAPAAE--KRRYIDGYSSAGSRNSLKGRRSHRYDS-------DFGRSGSWSERSKAF-ETETGDDSVSGHQEEQPLAEDIASSVQRSASGEFMRKCEGAGDSESVLDKYNLQDEAQSKTGSSSAGKDIVQ--DCEISKVSEGSSSLSAGSGE 275
The following BLAST results are available for this feature:
BLAST of DC887659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4645_ARATH3.063e-4045.05Uncharacterized protein At4g26450 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionDC887659 EIC Citrus sinensis cDNA clone EIC0690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887659 ID=DC887659; Name=DC887659; organism=Citrus sinensis; type=EST; length=716bp
CTCTCCAGTCTCCACATTCATGTTTGTTGATTCCACAGCTTTCCTGGAGA
ATTCACCATCAGTCTCTTTAAGTAAATCTTTTCCGTTGCTTGAAGAACTC
ACTCGTGAGCCCATTACATCAAGGACGTTATGCTTATCCGATTCAGCCTC
TATGCTACCAGCTTCCTCACTTTTTGGTGCAAATCCACCCGTCCCAGCCT
TCTGCAACCCATTATCAACATCTTTACCAAGACGTTGCTCCTCTTGATGC
CCAGAATAAGAGTCATCATCACCCTCCACATCGGGGGAAATTTTATTTCT
CTCTGACCATGAACCAGTCCTGCCATATTCTCTTCCCCAATCTGATCCGT
AACTTCTGAAGGACCCTTTCCTCCTACCTTTCAAATAATTCCCCAACCCC
ATTGAGTTATAATCATCTGGGTATCTTCTCCTACCAGACTCCACATCGGA
ACCAGAATTCCCAAGACGGGTAAGGGCTGATGTCCGACCTTCCGATGGAA
GTTGCATACCATCTCCATCTAGTGACCTAAAATTACCATTCTGCGATTTA
CCAGACAGTACACTGGAAGGCAGCAGTCCCTGCGAAACCAGATACTCAGC
GGCAAGTCGACCTGCTTCCATGAAAATGTCACCCTTTCTTGGTGTGGGAG
GCGGCGGCTGAAATGATTTANGCTGGCCCTGGCCACGCCCAAACCCACGG
TTGAAGCCCCGGTATT
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