CN185076
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3 Query: 258 NSISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401 +S S+C QDFQLGET RSLPHCHHMFH+PCID WLL H SCP+CRRD+ Sbjct: 194 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241 HSP 2 Score: 74.7146 bits (182), Expect = 4.427e-13 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 4 GAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ-------VR--PYCYSSFN 198 GAV+ +FD+ ++FDTG SKGLTG+ V+KIPK+TIT NN DAS SCSVCLQ VR P+C+ F+ Sbjct: 147 GAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFH 220
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 3 Query: 258 NSISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401 +S S+C QDFQLGET RSLPHCHHMFH+PCID WL H SCP+CRRDL Sbjct: 189 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236 HSP 2 Score: 82.4185 bits (202), Expect = 2.123e-15 Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 4 GAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ-------VR--PYCYSSFN 198 GAV+ +F+E +IFDTG SKGLTG+ VDKIPKI IT KNN+DASG + SCSVCLQ VR P+C+ F+ Sbjct: 142 GAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFH 215
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18 Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3 Query: 261 SISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401 S S+C QDFQ+GET RSLPHCHHMFH+PCIDKWL HASCPLCRR L Sbjct: 175 SCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 221
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 1.311e-13 Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 3 Query: 267 SLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRR 395 ++C QD + GE RSLP C H FH+ C+DKWL+ H SCP+CR+ Sbjct: 177 TICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219 HSP 2 Score: 28.8758 bits (63), Expect = 1.311e-13 Identity = 13/52 (25.00%), Postives = 31/52 (59.62%), Query Frame = 1 Query: 13 EVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ 168 +VS++E +++ ++GL+G+S+ K+P ++ + + C++CLQ Sbjct: 133 DVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEM---VRRQVTHCTICLQ 181
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 4.044e-11 Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 3 Query: 267 SLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCR 392 S+C +FQ E+ R LP C+H FH+PCID WL H++CPLCR Sbjct: 160 SVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201 HSP 2 Score: 22.7126 bits (47), Expect = 4.044e-11 Identity = 12/33 (36.36%), Postives = 17/33 (51.52%), Query Frame = 1 Query: 73 GESVDK--IPKITITDKNNIDASGERVSCSVCL 165 G+ +D+ I IT+ +D E CSVCL Sbjct: 131 GDGLDESLIKSITVYKYRKMDGFVESSDCSVCL 163 The following BLAST results are available for this feature:
BLAST of CN185076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185076 ID=CN185076; Name=CN185076; organism=Citrus sinensis; type=EST; length=636bpback to top |