CN185076

Overview
NameCN185076
Unique NameCN185076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  258 NSISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401
            +S S+C QDFQLGET RSLPHCHHMFH+PCID WLL H SCP+CRRD+
Sbjct:  194 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241          

HSP 2 Score: 74.7146 bits (182), Expect = 4.427e-13
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 GAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ-------VR--PYCYSSFN 198
            GAV+ +FD+  ++FDTG SKGLTG+ V+KIPK+TIT  NN DAS    SCSVCLQ       VR  P+C+  F+
Sbjct:  147 GAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFH 220          
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 3
Query:  258 NSISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401
            +S S+C QDFQLGET RSLPHCHHMFH+PCID WL  H SCP+CRRDL
Sbjct:  189 DSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236          

HSP 2 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 GAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ-------VR--PYCYSSFN 198
            GAV+ +F+E  +IFDTG SKGLTG+ VDKIPKI IT KNN+DASG + SCSVCLQ       VR  P+C+  F+
Sbjct:  142 GAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFH 215          
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3
Query:  261 SISLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRRDL 401
            S S+C QDFQ+GET RSLPHCHHMFH+PCIDKWL  HASCPLCRR L
Sbjct:  175 SCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRRHL 221          
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.311e-13
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  267 SLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCRR 395
            ++C QD + GE  RSLP C H FH+ C+DKWL+ H SCP+CR+
Sbjct:  177 TICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219          

HSP 2 Score: 28.8758 bits (63), Expect = 1.311e-13
Identity = 13/52 (25.00%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   13 EVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERVSCSVCLQ 168
            +VS++E  +++    ++GL+G+S+ K+P   ++ +       +   C++CLQ
Sbjct:  133 DVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEM---VRRQVTHCTICLQ 181          
BLAST of CN185076 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 4.044e-11
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 3
Query:  267 SLCAQDFQLGETARSLPHCHHMFHIPCIDKWLLGHASCPLCR 392
            S+C  +FQ  E+ R LP C+H FH+PCID WL  H++CPLCR
Sbjct:  160 SVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201          

HSP 2 Score: 22.7126 bits (47), Expect = 4.044e-11
Identity = 12/33 (36.36%), Postives = 17/33 (51.52%), Query Frame = 1
Query:   73 GESVDK--IPKITITDKNNIDASGERVSCSVCL 165
            G+ +D+  I  IT+     +D   E   CSVCL
Sbjct:  131 GDGLDESLIKSITVYKYRKMDGFVESSDCSVCL 163          
The following BLAST results are available for this feature:
BLAST of CN185076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL2B_ARATH5.345e-1977.08RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL4M_ARATH9.118e-1977.08RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL5P_ARATH1.555e-1880.85RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL1Q_ARATH1.311e-1355.81RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
ATL3A_ARATH4.044e-1157.14RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185076 ID=CN185076; Name=CN185076; organism=Citrus sinensis; type=EST; length=636bp
GAGGGAGCTGTTGAAGTAAGCTTCGATGAGGCACCCAACATCTTTGACAC
TGGCCTTTCAAAAGGGTTAACAGGAGAATCGGTCGATAAGATCCCAAAGA
TAACAATTACTGACAAGAACAACATAGATGCTTCTGGAGAGAGAGTTTCT
TGTTCAGTGTGCCTTCAGGTTCGCCCATACTGTTATTCTTCATTCAATCC
ACTTTTTGTAATCTCAATTTGATTTCTTAAATGTAATTAGTTGCCAAGAA
ACTGTTTAATTCAATTTCTTTGTGTGCTCAGGACTTTCAGCTTGGTGAAA
CAGCTAGAAGTTTGCCTCATTGCCATCACATGTTTCACATACCTTGCATA
GATAAGTGGCTCCTTGGGCATGCTTCTTGCCCATTATGTCGGAGGGATCT
GTAATGTGTTGCATTTTCTTTTCTGTAAATAACTTTATCCAAAATTTCTT
TTTTACTTATTTATACACTCATTACCATTAGATGTTTTGTATTTTGTCCA
TTAAGTATGTAGCCACTCCCTTTCTGTGGTAGCTGGGCGCCTTGTCTCAC
TATGGATCGATGTATTTTGATGAGCCATATGTATAAAATTTTGAATTAAC
AGTGTGCTTCTTTCTTCCGTCCATATCTCATATCTT
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