DC887657

Overview
NameDC887657
Unique NameDC887657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1053 contig Csv1_Contig1053:341..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   76 ASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   76 ASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:  123 ASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 192          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:  125 ASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 194          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK-QAPNAGTGAPTTQEDDDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q  Q    G  A    +DDDDE+P+LV
Sbjct:   77 ASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLV 148          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P   ++++D+VP+LV
Sbjct:   76 ASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEEDDVPDLV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   76 ASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   76 ASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S +ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   76 ASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146          
BLAST of DC887657 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  353 SSXAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 565
            +S  +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++DD+D++P+LV
Sbjct:  117 ASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLV 186          
The following BLAST results are available for this feature:
BLAST of DC887657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BT3L4_XENTR1.048e-1246.48Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA1.048e-1246.48Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BTF3_MOUSE1.368e-1252.11Transcription factor BTF3 OS=Mus musculus GN=Btf3 ... [more]
BTF3_HUMAN1.368e-1252.11Transcription factor BTF3 OS=Homo sapiens GN=BTF3 ... [more]
NACB_AJECN5.200e-1247.22Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_BOVIN1.158e-1143.66Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
BT3L4_PONAB1.513e-1143.66Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE1.513e-1143.66Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN1.513e-1143.66Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
NACB_ASPOR2.581e-1145.07Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionDC887657 EIC Citrus sinensis cDNA clone EIC0686 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887657 ID=DC887657; Name=DC887657; organism=Citrus sinensis; type=EST; length=579bp
GCAATTTTAGCCGCCTGTTTCATTGAAGAGCAACCGATCCGACAACATCA
GACTTACAACAAAATGCACAATAGAAAGCCATTGCAACAGTGCCTCTGGA
TTCTGAAAGAGTAAAAGGGTTTTCACTGGTTTCACTGGAGCAAAACATTG
AATTAAAAAGTAACAATATCTAGTGTCACAGGGNAGAATCAGATAAAACA
AGAGAAAGTTGACTCGGAAAAGTAAAATAAAAACTCAAAAAACATAGAAA
ATATATAGAATAACACAAAGTCCCTCTAGATAAAACTCTCTAAGAAGCAG
CGTCAGGTTTCTCTGTTTTCTCCTCTGCGGCAGCTTCAAACGTCTCGCCT
GCCACAAGCTCTGGGACCTCATCGTCGTCGTCCTCTTGAGTCGTGGGTGC
ACCAGTTCCTGCATTAGGTGCTTGCTTCTGAAACTGCTCCGCCAACTTCC
TCAGGTTGTCCAAATTATCTGGCCCCAATTGATTGATAATTCCAGGGAGA
ATATCCTGCAACTTCTTGGTTTGTGGGGCACCACTAACTACCCATGTGTT
GGCAGCNATTGAGCTTGTACTTTGGGATT
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