DC887644

Overview
NameDC887644
Unique NameDC887644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:204..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887644 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.194e-17
Identity = 62/192 (32.29%), Postives = 88/192 (45.83%), Query Frame = -3
Query:  107 GFKALIPDLYRGKVGLDTAEAQHLMSGL-----DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 655
            GF A  PD Y GK   +  +A  LM+ +     D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   55 GFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231          

HSP 2 Score: 28.8758 bits (63), Expect = 1.194e-17
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = -2
Query:  687 PGIXVVQEWWGVDFEIKN 740
            PG+ V+ EWWG++  + N
Sbjct:   26 PGVIVIHEWWGLESPLSN 43          
BLAST of DC887644 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.821e-15
Identity = 58/187 (31.02%), Postives = 88/187 (47.06%), Query Frame = -3
Query:  107 GFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 655
            G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  108 GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278          
BLAST of DC887644 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.257e-14
Identity = 57/189 (30.16%), Postives = 83/189 (43.92%), Query Frame = -3
Query:  110 GFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYL 655
            GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V            +GV  +V ++ G  HAF+N          E   D +DP     AW    ++   YL
Sbjct:   55 GFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV---IDIAKTVWKNGVDVQVKVFSGVTHAFLN----------EKREDVYDPKRACEAWELAVNFFKTYL 230          

HSP 2 Score: 25.0238 bits (53), Expect = 5.257e-14
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  687 PGIXVVQEWWGVDFEIKN 740
            P + V  EWWG++  + N
Sbjct:   26 PAVLVFHEWWGLESPLSN 43          
The following BLAST results are available for this feature:
BLAST of DC887644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY1.194e-1732.29Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
YGHX_ECOLI2.821e-1531.02Putative uncharacterized protein yghX OS=Escherich... [more]
DLHH_AQUAE5.257e-1430.16Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionDC887644 EIC Citrus sinensis cDNA clone EIC0667 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887644 ID=DC887644; Name=DC887644; organism=Citrus sinensis; type=EST; length=747bp
TTGCAGCTGTGTTATATGTAGAGTAGAGGCATACACACAGTTATTTATTT
AATGATGGAAGCGAGGTAAACACCATAGATTCATAATACTAGTGAATTAC
TTAAGCAGATAAGTAGCGGGTCATCCATGATTGGAAGCGAGACCACGCCA
GCTCAACTGCGGCTGGATCGTGATCATCCATTCCCATTTCTTTCCTCCTC
TTCACTCCATCCGGAGAAATGTTCATGAAAGCATGTGCACTGCCAGGATA
AATATGTACCTCATATGGAACACCAGATGCTTTCAGCTTTTCCTCCAATG
CTTTGGCAGTTTTCACATCTGAAAAGCCAACAAAATTGTCAAGCTCCCCA
AAATGAGCTTGAACAGGTGCCTTAGCCTGGGTAGGATCGGCGAGCTCAGG
TGGGGGAACCCCATAAAATGAAACAACAGCATCAACCTCAGGAACTAAGA
CAGAACTTGCAATAGCGAGAGCACCTCCCATGCAATATCCAGTCACGCCA
ACCTTCTTGGAACCATTTGCCTTAAGCCAATTAACTGAAGCGTGGATATC
CTTGACAGCACCTGGCCAATCAAGACCACTCATCAAGTGCTGTGCTTCAG
CAGTATCCAAACCAACCTTTCCCCGATATAAATCTGGTATAAGTGCCTTG
AATCCAGGATTTAGTTTGGGAGATTTTGACAGCATGGTTCTTGATCTCAA
AATCAACACCCCACCACTCCTGAACTACAANAATCCCAGGGGCGTCT
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