CN185049

Overview
NameCN185049
Unique NameCN185049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 1.987e-116
Identity = 195/230 (84.78%), Postives = 212/230 (92.17%), Query Frame = 3
Query:  141 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MKVIDKIQ      K  FSFEFFPPKTEDGV+NLFERMDRMVA+ P FCDITWGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGF CALDLV HIRS YGDYFGITVAGYPE HPD IG +G+ASNE+YQSDL YLKKK+DAGADLI+TQLFYDTD+FLKFVNDCRQIGI+CPIVPGIMPINNY+GF
Sbjct:    1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGENGLASNEAYQSDLEYLKKKIDAGADLIVTQLFYDTDIFLKFVNDCRQIGISCPIVPGIMPINNYRGF 230          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.424e-114
Identity = 192/230 (83.48%), Postives = 210/230 (91.30%), Query Frame = 3
Query:  141 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MKV+DKI+      +  FSFEFFPPKTEDGVENLFERMDR+V++ P FCDITWGAGGSTADLTL+IA+RMQN ICVETMMHLTCTNMP+EKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV HIRS YGDYFGITVAGYPE HPD I  DG+A+ ESYQSDL YLKKKVDAGADLI+TQLFYDTD+FLKFVNDCRQIGI CPIVPGIMPI+NYKGF
Sbjct:    1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMDRLVSYGPTFCDITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVNHIRSKYGDYFGITVAGYPEAHPDVIEADGLATPESYQSDLAYLKKKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGINCPIVPGIMPISNYKGF 230          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.860e-114
Identity = 192/230 (83.48%), Postives = 211/230 (91.74%), Query Frame = 3
Query:  141 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MKVI+KI E     +  FSFE+FPPKTE+GVENLFERMDRMVAH P+FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKIDHAL+TIKSNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV+HIR+ YGDYFGITVAGYPE HPD I  +G A+ E+Y +DL YLK+KVDAGADLI+TQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGF
Sbjct:    1 MKVIEKILEAAGDGRTAFSFEYFPPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQGEGGATLEAYSNDLAYLKRKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGF 230          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 2.274e-112
Identity = 192/230 (83.48%), Postives = 208/230 (90.43%), Query Frame = 3
Query:  141 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MKVI+KIQE  A  + VFSFE+FPPKTE+G++NLFERMDRMVAH P FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKID AL TIKSNGIQNVLALRGDPPHGQDKFVQ+ GGFACALDLV+HIR+ YGDYFGITVAGYPE HPD I     A+ E+Y +DL YLK+KVDAGADLIITQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGF
Sbjct:    1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGF 230          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.916e-59
Identity = 115/233 (49.36%), Postives = 153/233 (65.67%), Query Frame = 3
Query:  141 MKVIDKI-QEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMV-AHNPAFCDITWGAGGST-ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MK+ +K+ Q +  S K  +SFE+F PKT  GV+NL++RMDRM  A  P F DITW AGG   + L+ D+    Q+ + +ET MHLTCTNMP+  ID AL+    +G QN+LALRGDPP   + +  ++GGF  A DL+K+I+S YGD+F I VAGYPE HP+         N+  + DL YLK+K+DAG D IITQ+FYD D F+ + +  R  G+  PI+PGIMPI  Y  F
Sbjct:    1 MKITEKLEQHRQTSGKPTYSFEYFVPKTTQGVQNLYDRMDRMYEASLPQFIDITWNAGGGRLSHLSTDLVATAQSVLGLETCMHLTCTNMPISMIDDALENAYHSGCQNILALRGDPPRDAENWTPVEGGFQYAKDLIKYIKSKYGDHFAIGVAGYPECHPE-------LPNKDVKLDLEYLKQKIDAGGDFIITQMFYDVDNFINWCSQVRAAGMDVPIIPGIMPITTYAAF 226          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 111/231 (48.05%), Postives = 145/231 (62.77%), Query Frame = 3
Query:  141 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGF 830
            MK+ DK+      +KV +S+EFFPPKT  GV+NL+ R+DRM     P F D+TWGAGG++++LT  I N +Q    V+T MHLTCTNM  E ID AL+     G +N+LALRGDP    D + + + GF  A DLV++IR+ Y D F I VAGYPEG+     PD     +     + +LK KVD GAD I+TQ+FYD D F+ +V+  R  GI  PI PGIMPI  +  F
Sbjct:    1 MKISDKLLHPDWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSELTPGIVNVIQTDFEVDTCMHLTCTNMSTEMIDAALKRAHETGCRNILALRGDPVKDTD-WTEGESGFRYASDLVRYIRTHYNDEFCIGVAGYPEGY----SPD-----DDIDESIKHLKLKVDEGADFIVTQMFYDVDNFIAWVDKVRAAGINIPIFPGIMPIQAWDSF 221          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.890e-52
Identity = 105/227 (46.26%), Postives = 143/227 (63.00%), Query Frame = 3
Query:  153 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 821
            DK++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP    D++ + +GGF  A+DLVKHIRS +GDYF + VAGYP+GHP+           S+++DL +LK+KV AGAD IITQLF++ D F +FV  C  +GITCPIVPGI PI  Y
Sbjct:   47 DKMRRRMESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGDPIG--DQWEEEEGGFNYAVDLVKHIRSEFGDYFDLCVAGYPKGHPEA---------GSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGY 262          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.005e-51
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 3
Query:  153 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 821
            +K++ ++ S    FS EFFPP+T +G  NL  R DRM A  P + D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP    D++ + +GGF  A+DLVKHIRS +GDYF I VAGYP+GHP+           S+++DL +LK+KV AGAD IITQLF++ D F +FV  C  +GITCPIVPGI PI  Y
Sbjct:   47 EKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIG--DQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEA---------GSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGY 262          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.923e-51
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 3
Query:  153 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 821
            +K++ K+ S    FS EFFPP+T  G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC +   E+I   L   K  G++N+LALRGDP    D++ + +GGF  A DLVKHIR+ +GDYF + VAGYP+GHP+          ES+++DL +LK+KV AGAD IITQLF++ + F +FV  C +IGITCP++PGI PI  Y
Sbjct:   46 EKMKRKMDSGDKWFSLEFFPPRTAQGAVNLISRFDRMGAGGPLFVDVTWHPAGDPGSDKETSSMVIASTAVNYCGLETILHMTCCHQSREEITGHLNKAKQLGLKNILALRGDPIG--DQWEEEEGGFNYATDLVKHIRNEFGDYFDVCVAGYPKGHPE---------GESFEADLKHLKEKVAAGADFIITQLFFEAETFFRFVKACSEIGITCPVLPGIFPIQGY 261          
BLAST of CN185049 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.221e-50
Identity = 103/227 (45.37%), Postives = 137/227 (60.35%), Query Frame = 3
Query:  153 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNY 821
            +K++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC     E+I   L   K  G++N++ALRGDP    D +   +GGF+ A DLVKHIR+ + DYF I VAGYP GHPD          ES++ DL +LK+KV AGAD IITQLF++   F  FV  C +IGI+CPI+PGI PI  Y
Sbjct:   46 EKMRRRMDSGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFVDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCQQRPEEITGHLHRAKQLGLKNIMALRGDPVG--DHWEAEEGGFSYATDLVKHIRTEFADYFDICVAGYPRGHPDA---------ESFEDDLKHLKEKVSAGADFIITQLFFEASTFFSFVKACTEIGISCPILPGIFPIQGY 261          
The following BLAST results are available for this feature:
BLAST of CN185049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MTHR2_ARATH1.987e-11684.78Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH1.424e-11483.48Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR1_MAIZE1.860e-11483.48Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_ORYSJ2.274e-11283.48Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_YEAST2.916e-5949.36Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_SCHPO6.957e-5348.05Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_MACFA5.890e-5246.26Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN1.005e-5145.81Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN2.923e-5145.81Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE4.221e-5045.37Methylenetetrahydrofolate reductase OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185049 ID=CN185049; Name=CN185049; organism=Citrus sinensis; type=EST; length=830bp
GAGGTCTCTTTTACTTTCATCTCGCATCCATTCTTTCCATTTTTCTTTTT
CATAAATCACCCTCGCAGATCTGAACTCAACCGACAACTCACTCGTAAAC
GACCTGTCGGTGGCAGCAGTAGCTACTCTCCGAACCAAAAATGAAGGTAA
TAGACAAGATTCAAGAGAAAGTAGCCTCCGACAAGGTCGTCTTCTCCTTC
GAATTCTTCCCGCCGAAGACGGAAGATGGCGTGGAGAACTTGTTCGAGCG
GATGGACCGCATGGTGGCCCACAACCCGGCATTCTGCGACATCACGTGGG
GGGCGGGTGGCTCCACGGCCGATCTGACTCTCGACATCGCGAACAGGATG
CAGAACACGATATGCGTCGAGACGATGATGCATTTGACGTGCACGAACAT
GCCCGTCGAGAAGATCGATCACGCTCTTCAGACTATTAAGTCCAACGGCA
TCCAGAACGTTCTCGCTCTTCGCGGCGATCCTCCTCACGGTCAGGATAAG
TTCGTTCAGATCCAGGGTGGCTTCGCCTGCGCTCTTGATCTCGTGAAACA
TATTAGGTCTGCTTATGGTGATTACTTTGGCATCACTGTTGCTGGTTACC
CAGAGGGACATCCGGATACCATTGGACCTGATGGCGTGGCCAGTAATGAA
TCATATCAAAGTGATCTTCTTTATCTGAAGAAAAAGGTGGATGCTGGTGC
AGATCTAATTATCACTCAACTATTCTATGATACTGACATGTTTCTTAAGT
TTGTGAATGACTGTCGCCAAATTGGAATTACCTGCCCCATTGTTCCTGGA
ATTATGCCCATTAATAACTATAAGGGTTTC
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