CN185047

Overview
NameCN185047
Unique NameCN185047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10303 contig Csv1_Contig10303:35..356. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIC2_ARATH (Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-32
Identity = 67/84 (79.76%), Postives = 80/84 (95.24%), Query Frame = 1
Query:   70 MAPAAASDSIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            MAP  + DS++PRDVC+VGVARTP+G FLG+LSSL+AT+LGSIAI+AALKRA+VDP+LV+EVFFGNVL+ANLGQAPARQAALGA
Sbjct:    1 MAPPVSDDSLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVLTANLGQAPARQAALGA 84          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIC1_ARATH (Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   79 AAASDSIKPRDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            A  S+S+ PRDVCIVGVARTPMGGFLG+LSSL ATKLGS+AI AALKRANVDP+LVQEV FGNVLSANLGQAPARQAALGA
Sbjct:    2 AHTSESVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVLSANLGQAPARQAALGA 82          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIL_SCHPO (Acetyl-CoA acetyltransferase OS=Schizosaccharomyces pombe GN=erg10 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.802e-19
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V IV   RTPMG F G+ +SL ATKLGSIAI+ AL+R N+ PS V EVF GNV+SANLGQ PARQ ALGA
Sbjct:    5 EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQNPARQCALGA 75          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THILB_XENLA (Acetyl-CoA acetyltransferase B, mitochondrial OS=Xenopus laevis GN=acat1-B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.438e-17
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V I   ARTP+G F GTLSSL ATKLGSIAI+AA++RA +    V+EV+ GNVL A  GQAP+RQA LGA
Sbjct:   34 EVVIASAARTPIGSFQGTLSSLPATKLGSIAIKAAVERAGIPADEVKEVYMGNVLQAGQGQAPSRQATLGA 104          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THILA_XENLA (Acetyl-CoA acetyltransferase A, mitochondrial OS=Xenopus laevis GN=acat1-A PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.438e-17
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V I   ARTP+G F GTLSSL ATKLGSIAI+AA++RA +    V+EV+ GNVL A  GQAP+RQA LGA
Sbjct:   34 EVVIASAARTPIGSFQGTLSSLPATKLGSIAIKAAVERAGIPADEVKEVYMGNVLQAGQGQAPSRQATLGA 104          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIL_XENTR (Acetyl-CoA acetyltransferase, mitochondrial OS=Xenopus tropicalis GN=acat1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.264e-17
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V I   ARTP+G F G+LSSL ATKLGSIAI+AA++RA +    V+EV+ GNVL A  GQAP+RQA LGA
Sbjct:   34 EVVIASAARTPIGSFQGSLSSLPATKLGSIAIKAAVERAGIPGDEVKEVYMGNVLQAGQGQAPSRQATLGA 104          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIL1_DICDI (Probable acetyl-CoA acetyltransferase OS=Dictyostelium discoideum GN=DDB_G0271544 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.520e-16
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  112 VCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            V IV   RTP+G   G+LS++  TKL SI IE A+KRA + PS V E   GNV+SANLGQAPARQ ALGA
Sbjct:   26 VVIVSAVRTPIGSIGGSLSTIPGTKLSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGA 95          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.520e-16
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V IV   RTP+G F G LSS+SA  LG+I I+ A+KRAN++ +LV EV  GNVL A LGQ PARQAAL A
Sbjct:    3 NVVIVSAVRTPIGSFNGALSSVSAVDLGAIVIQEAIKRANIESALVNEVIMGNVLQAGLGQNPARQAALKA 73          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIL_BOVIN (Acetyl-CoA acetyltransferase, mitochondrial OS=Bos taurus GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  109 DVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            +V IV   RTP+G FLG+LSSL ATKLGSIAI+ A+++A +    V+E + GNVL    GQAP RQA LGA
Sbjct:   36 EVVIVSAIRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGA 106          
BLAST of CN185047 vs. ExPASy Swiss-Prot
Match: THIL_HUMAN (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  106 RDVCIVGVARTPMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGA 321
            ++V IV   RTP+G FLG+LS L ATKLGSIAI+ A+++A +    V+E + GNVL    GQAP RQA LGA
Sbjct:   40 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGA 111          
The following BLAST results are available for this feature:
BLAST of CN185047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
THIC2_ARATH1.573e-3279.76Probable acetyl-CoA acetyltransferase, cytosolic 2... [more]
THIC1_ARATH2.683e-3286.42Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabi... [more]
THIL_SCHPO5.802e-1967.61Acetyl-CoA acetyltransferase OS=Schizosaccharomyce... [more]
THILB_XENLA2.438e-1763.38Acetyl-CoA acetyltransferase B, mitochondrial OS=X... [more]
THILA_XENLA2.438e-1763.38Acetyl-CoA acetyltransferase A, mitochondrial OS=X... [more]
THIL_XENTR9.264e-1761.97Acetyl-CoA acetyltransferase, mitochondrial OS=Xen... [more]
THIL1_DICDI3.520e-1661.43Probable acetyl-CoA acetyltransferase OS=Dictyoste... [more]
ATOB_HAEIN3.520e-1660.56Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
THIL_BOVIN1.024e-1557.75Acetyl-CoA acetyltransferase, mitochondrial OS=Bos... [more]
THIL_HUMAN2.282e-1555.56Acetyl-CoA acetyltransferase, mitochondrial OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006K06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185047 ID=CN185047; Name=CN185047; organism=Citrus sinensis; type=EST; length=321bp
CCGAAAACATCTCCTCCTCACGTGATCCAACTCACTCTGAATCTCGCAGA
TCGTGATTGGCATTGACAAATGGCTCCAGCGGCAGCATCTGATTCGATAA
AGCCTAGAGATGTTTGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGA
TTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGC
TATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCATCACTTGTACAAG
AAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGGACAGGCTCCTGCT
AGACAGGCTGCATTGGGTGCA
back to top