EY666501

Overview
NameEY666501
Unique NameEY666501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.425e-117
Identity = 203/228 (89.04%), Postives = 217/228 (95.18%), Query Frame = 2
Query:   77 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNYE 760
            DKP + L+NG SLYYMSSLPNEAVY+KEK+GV WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSP+NFQVYTALLKPH+RIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPY+L+ESTGYIDYDQLEKSATLF+PKLI  GA+AYA+  +Y+
Sbjct:   15 DKPVKSLYNGGSLYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYD 242          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 4.732e-113
Identity = 200/227 (88.11%), Postives = 211/227 (92.95%), Query Frame = 2
Query:   77 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNY 757
            DKP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSP+NF VYTALLK HDRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPY+LNESTGYIDYDQLEKSATLF+PKLI  GA+AYA+  +Y
Sbjct:   15 DKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 1.054e-112
Identity = 198/227 (87.22%), Postives = 213/227 (93.83%), Query Frame = 2
Query:   77 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNY 757
            +K +RPLF+ SSLYY SSLP+EAVY+KE   VTWPKQLN+PLEV+DPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSGSPSNFQVYTALLKPHDRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPY+L+ESTGYIDYDQLEKSATLF+PKLI  GA+AYA+  +Y
Sbjct:   15 NKSSRPLFSASSLYYKSSLPDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 5.784e-111
Identity = 197/227 (86.78%), Postives = 211/227 (92.95%), Query Frame = 2
Query:   77 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNY 757
            DKP RPL   +S Y MSSLP+EAV EKE++ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWGVNVQ LSGSP+NF VYTALLKPH+RIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPY+L+ESTGYIDYDQ+EKSATLF+PKLI  GA+AYA+  +Y
Sbjct:   15 DKPIRPLIRSTSCY-MSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDY 240          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 1.425e-109
Identity = 196/227 (86.34%), Postives = 208/227 (91.63%), Query Frame = 2
Query:   77 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNY 757
            +KP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEV DPEIADIIE EKARQWKGLELI SENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLD  KWGVNVQ LSGSP+NF VYTALLK HDRIMA DLPHGGHLSHGYQTDTKKISAVSIFFETMPY+LNESTGYIDYDQLEKSATLF+PKLI  GA+AYA+  +Y
Sbjct:   15 NKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 241          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.081e-68
Identity = 125/193 (64.77%), Postives = 149/193 (77.20%), Query Frame = 2
Query:  182 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNYE 760
            K L APL   DP +  I+E EK+RQ + + LI SENFTS +VM A+GS+M NKYSEGYPGARYYGGNE+ID AE LCQ RALEAF LD EKWGVNVQ  SGSP+N Q Y A++KPHDR+M  DLPHGGHLSHG+ T  K ISAVS +F TMPY +N+ TG IDYD LEK+A  F+PK+I  GA+AYA+  +Y+
Sbjct:   12 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYK 204          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.909e-68
Identity = 127/190 (66.84%), Postives = 154/190 (81.05%), Query Frame = 2
Query:  191 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNYE 760
            N PL+ VD EI +++  EK RQ+KGLELI SENFTS +VM+A+GS  TNKY+EGYPG+RYYGG E +D  E+LCQKRAL+AFRLD  KWGVNVQ  SGSP+NF VYTALL+PHDRIM  DLP GGHL+HGYQTD KKISA SIFFE+MPY++  + G IDY +LE++A LFKPKLI  GA+AY +  +Y+
Sbjct:    7 NTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIG-ADGLIDYQRLEENALLFKPKLIISGASAYPREWDYK 195          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.005e-67
Identity = 122/191 (63.87%), Postives = 151/191 (79.06%), Query Frame = 2
Query:  188 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNYE 760
            ++  ++ VDPE+ADI+  E+ RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGNE ID AE+LCQKRALEAF LDP +WGVNVQ LSG+P+N   Y+A+L+  DRIM  DLPHGGHLSHGYQT T KIS +S +F+TMPY+LNE TG IDYD LEK+A LF+PK+I  GA+AY++  +Y+
Sbjct:   35 ISKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLDLPHGGHLSHGYQTKTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGASAYSRVIDYK 225          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.925e-67
Identity = 120/187 (64.17%), Postives = 148/187 (79.14%), Query Frame = 2
Query:  197 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNY 757
            PL+  DP +A+I+ HE  RQ   + LI SENFTS +VM A+GSVM+NKYSEGYPGARYYGGN++ID  E+LCQ+RAL AF LDP KWGVNVQ LSGSP+N QVY A++ PH R+M  DLP GGHLSHGYQTDTKKISAVS +FE+MPY+++ +TG IDYD LE  A LF+PK++  G +AY +  +Y
Sbjct:   11 PLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDY 197          
BLAST of EY666501 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.340e-66
Identity = 121/190 (63.68%), Postives = 150/190 (78.95%), Query Frame = 2
Query:  191 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAPDLPHGGHLSHGYQTDTKKISAVSIFFETMPYKLNESTGYIDYDQLEKSATLFKPKLIGGGANAYAQWNNYE 760
            N  +   DPEI D++  EK RQ+ GLELI SENFTS +VM+++GS  TNKY+EG PGARYYGGNE +D  E+LC KRALE F L+PE+WGVNVQ  SGS +NF  +T LLKPHDRIM  DLP GGHL+HGYQTD KKISA SIFFE+MPY++NE TGY+DY+++E +A LF+PKL+  GA+AY +  +YE
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTDKKKISATSIFFESMPYQVNE-TGYVDYNKMEANAALFRPKLLIAGASAYPREWDYE 219          
The following BLAST results are available for this feature:
BLAST of EY666501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU2.425e-11789.04Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR4.732e-11388.11Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA1.054e-11287.22Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH5.784e-11186.78Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR1.425e-10986.34Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_SCHPO2.081e-6864.77Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC1_DICDI7.909e-6866.84Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYM_CANAL3.005e-6763.87Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO3.925e-6764.17Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC2_DICDI4.340e-6663.68Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666501 ID=EY666501; Name=EY666501; organism=Citrus sinensis; type=EST; length=852bp
ACAACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGG
CTCTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTC
AATGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTA
CGAGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCAC
TTGAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCA
CGACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGT
ATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAG
GATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCG
GAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGA
AAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTC
AAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACCTGAT
CTTCCTCATGGTGGGCATCTCTCACACGGCTATCAAACAGATACAAAAAA
GATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAAATTGAATG
AGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTC
TTCAAGCCAAAATTGATTGGTGGTGGGGCTAATGCTTATGCCCAATGGAA
CAATTATGAAGCGGATTCCCAAGGGTTGGCAACAACAAAAAAGTTTAAAT
GTGGGCAAAAATGGGAAACATTTAAGGGGGTTTGGGGGCTGCCGGGGGGG
AT
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