DC887642

Overview
NameDC887642
Unique NameDC887642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7671 contig Csv1_Contig7671:157..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887642 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = -3 
Query:  439 NEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXVANGKLVKVKNSFKL 618
            +EAIT+LKERTGSS +AIAKF+E+K KA LP NF           VA GKL KVKNS+KL
Sbjct:   58 SEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117
The following BLAST results are available for this feature:
BLAST of DC887642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
H1_MAIZE6.009e-1261.67Histone H1 OS=Zea mays PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionDC887642 EIC Citrus sinensis cDNA clone EIC0662 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887642 ID=DC887642; Name=DC887642; organism=Citrus sinensis; type=EST; length=620bp
TTTTGATTAAACTAAAATTTTCTGTCCACACCTGTTCAAACAGAATCACA
AATCCAAATCAAAGACAAACCTAAAATTATCCCCAAATTTACAAACTCTA
AACCCTAAATCAAACAGAGCCATGCATTCGATTCATTTCTTTCCCTTCTT
GGCCGAAGCCTTCTTAACCGGCGACCTTATGCTCTTCAGCTTCTTCACTT
TGGCTGCAACCACCGCCTTCTTCGCCGGAGACTTGATCGACTTCACTGCC
GCTTCTTTTGCTTTTGGCTTGGACTTCGTCTGCTTAGCCGCAGCATCAGT
GGAGCTAGCTTTAGGCTTCTTCGCGGCGGCGGCAGCGGTAGAGGAAGGTT
TCGGCTTCTTGGCGGCAGTGGCGCCGGTAGAGGAAGGTTTCGGCTTCTTG
GCGGCAGCGGCGGCGGTAGAAGAGGACGATTTAGGAGGGAGCTTGAAGGA
GTTCTTGACTTTGACCAGCTTGCCGTTGGCAACAAGCTTCTTCAATTGAA
CGAGCAACAGTTTCTTGAAATTGTTAGGGAGACTAGCCTTCTGTTTCTCC
TCGATAAACTTCGCGATCGCAAATTGACTCGAGCCGGTCCTCTCCTTCAA
CGCAGTTATCGCTTCGTTTA
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