CN185042

Overview
NameCN185042
Unique NameCN185042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2624 contig Csv1_Contig2624:327..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQALI GIYDE L+ GQCNMIVERLGDYL+DQGL
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 37/57 (64.91%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR              QALI GIYDE ++ GQCNMIVERLGDYLIDQGL
Sbjct:   75 IQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR              QALI GIYDE ++ GQCNM+VERLGDYL+DQGL
Sbjct:   75 IQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = -3 
Query:  319 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQG 486
            I GEPGAVIR              QALI GIYDE ++ GQCNMIVERLGDYLIDQG
Sbjct:   75 IQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 130
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             G AL+ GIYDE ++ GQCNMIVERLGDYLIDQGL
Sbjct:   75 IQGEPGAVIRGKKGPGGATVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQALI GIYDE L+ GQCNMIVERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR              QALI GIYDE L+ GQCNMIVERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTSQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQALI GIYDE L+ GQCNMIVERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROFA_ORYSJ (Profilin-A OS=Oryza sativa subsp. japonica GN=Os10g0323600 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QGL
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_MAIZE (Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QGL
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131
The following BLAST results are available for this feature:
BLAST of CN185042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PROF6_HEVBR1.575e-1266.67Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_RICCO1.575e-1264.91Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF_LITCN2.687e-1261.40Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF2_HEVBR4.584e-1264.29Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF_CUCME7.819e-1263.16Profilin OS=Cucumis melo PE=1 SV=1[more]
PROF5_HEVBR7.819e-1263.16Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF4_HEVBR7.819e-1261.40Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF3_HEVBR7.819e-1263.16Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROFA_ORYSJ1.021e-1159.65Profilin-A OS=Oryza sativa subsp. japonica GN=Os10... [more]
PROF3_MAIZE1.021e-1159.65Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185042 ID=CN185042; Name=CN185042; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTCAAAAAATAATTGTCACCATATCATATTATCAGAGTATCAACA
GTATCCAAAGATTCAAATTCTTCAAAACTGCAATACACATAAATTAAGGA
AACATGAAGGAGTTGGGGATGAAAAAAAAAAGATAAAAAAGGAACCCTAA
AGAACCAAAAGAGGCGGGAAAAAAAAATCACTCTTGTCCTCACACAGTTA
TTTTTGCAGCAAACAAATTTATACTGCCAGTTCAAGACCAAATATGGAAG
AAAAGGCAAAGCCCGAAAACCATAAAGCAATATATCGAAACCATTTGAAG
TTGACATGGGATCTACAGGCCCTGATCAATGAGATAATCCCCCAACCTCT
CAACGATCATGTTGCACTGCCCTGAAGACAATGCTTCATCGTATATACCA
GAAATCAGGGCTTGGCCCGATTTCTTGACGGAGACACCACCAGAACCCTT
TTTTCCACGAATCACAGCGCCAGGCTCACCCGGGATTA
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