DC887635

Overview
NameDC887635
Unique NameDC887635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12716 contig Csv1_Contig12716:233..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.246e-21
Identity = 47/114 (41.23%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  214 FETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 546
            F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   42 FVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = -2
Query:  196 GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 549
            GF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   49 GFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  196 GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 549
            GFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   20 GFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = -2
Query:  217 FETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 546
            FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   42 FETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  208 GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 549
            GFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   20 GFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = -2
Query:  193 FETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 546
            F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   45 FMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  220 GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 549
            GF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   25 GFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of DC887635 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  220 FETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 546
            F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:   26 FITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of DC887635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OLEE1_BETVE4.246e-2141.23Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PSC13_MAIZE7.243e-2141.53Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
PHLB_PHLPR5.191e-1938.66Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC8.854e-1938.18Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
LOLB_LOLPR7.495e-1838.26Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL4.858e-1737.19Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU2.257e-1432.73Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU2.112e-1231.19Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC887635 EIC Citrus sinensis cDNA clone EIC0653 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887635 ID=DC887635; Name=DC887635; organism=Citrus sinensis; type=EST; length=550bp
ACTCTCAAGCTAGAAGCACCAGCATATAAATAAATTAATAGCGTACGCGT
CCTTTAACAACAAATTAAGAATTCTCTAAACATAGAAACAACACAGCCAT
CCGGGCACTACTAATAGAAGAGACAGTATAAGGCAACACAAAGCTTAAAC
AAATGGAAAGCGATAGAAAAAACCATGCCACACCATTCTCTACACATCCT
CCTCCTGATATAGCCTGAGAACCTCAGCACAGCCAGACATGGGCTCTGCC
TTCATGAAGCCCATTGAATTGGCATATCGGGTTTCAGAAGAAATGCCGTT
GTAACTGGTCAAGATCACACGGGAACGCTCACGCCCTGGGGCAACTGTTT
TGCAGTCATTCTGGGGGCTACTAATGAGGACAGCATCGCAAAGTTGATCC
TGATGGTCTTCTGAAACGAGGATCTTATATGTTCCAGTTGAGTCTGTTTT
CCCTTCCCTGCTATATACTACTTGCATTGACTTCCTGTCTTTGCATTCAA
CCTTAACCTTGGCACCGGCGATGTAGGTGGTAGCGGGGGTCTCAAAGCCG
back to top