DC887633

Overview
NameDC887633
Unique NameDC887633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887633_ssr502 microsatellite DC887633_ssr502:502..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887633 vs. ExPASy Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = -3 
Query:  263 QASAPAPSPTSDGTSIDQGIAYVLMAVALVLTYLIHTAD 379
            Q+ APAPSPTSDGTSIDQGIAY+LM VALVLTYLIH  D
Sbjct:   27 QSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65
[Close]
BLAST of DC887633 vs. ExPASy Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = -3 
Query:  263 QASAPAPSPTSDGTSIDQGIAYVLMAVALVLTYLIHTAD 379
            Q+ APAP+PTSDGTSIDQGIAY+LM VALVLTYLIH  D
Sbjct:   27 QSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65
The following BLAST results are available for this feature:
BLAST of DC887633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGP20_ARATH3.412e-1184.62Arabinogalactan peptide 20 OS=Arabidopsis thaliana... [more]
AGP16_ARATH7.601e-1182.05Arabinogalactan peptide 16 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionDC887633 EIC Citrus sinensis cDNA clone EIC0651 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887633 ID=DC887633; Name=DC887633; organism=Citrus sinensis; type=EST; length=582bp
TCCCCNCCCCCTCGANCAAAGAAACAACAATTATCAATGGCGTGGAGACG
AAGCCCAACGGCAATTTTTCGGACAGAAAACAGACTCAGCTAACCTATCA
ATGATATGATAAATGAAAGAAGAAGATGAACAACATCCTTCAATTTCTCT
CCCTTTCCACGTCTCTGCCGCGGCTTAGAACAAACGAACACATGCAAATC
CAAGCACCAAAATCTCCTAATCCATCCGCGGAGACATTGATAATTTACAA
GCTGTAACAGAAATCAGCAGTGTGAATGAGATAAGTGAGCACCAGCGCCA
CCGCCATCAGCACATATGCAATCCCTTGGTCAATCGACGTCCCATCACTG
GTGGGGCTAGGAGCGGGAGCTGAAGCCTGAGTTTGAATTTGAGCATTAGC
AAGAGCTGGAGGCAAGATAATAGCAAAGACAAGAACCACAACAACCGCGA
ATACCAATGATACCCTGGAAACCGCCATAGAAAAAGAAACTGGATATCAA
CCTCTCTCTCTCTCTCTCTCTCTGCAGCGACGCTCTCTCAGATTGATACG
GTAAAATGGGTCAGGCCGGAGGTGAGCGGCGC
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