DC887617

Overview
NameDC887617
Unique NameDC887617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9300 contig Csv1_Contig9300:104..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  283 KQLLRERLPYV*NXKIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 447
            K+ +  R P     +IPYFTVSGIQVRY+KIIEKSGY ALPWVRYIT +G+Y+LR
Sbjct:  367 KEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  283 KQLLRERLPYV*NXKIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 447
            K+ +  R P     +IPYFTVSGIQVRY+KIIEKSGY ALPWVRYIT +G+Y+LR
Sbjct:  367 KEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = -3
Query:  280 RLPYV*NXKIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELRL 429
            R P     +IPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  GEYE+R+
Sbjct:  372 RPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = -3
Query:  283 KIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 405
            +IPYFTVSGIQVRY+KIIEKSGY ALPWVRYIT +G+Y+LR
Sbjct:  381 EIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -3
Query:  283 KIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 405
            +IPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  G+Y+LR
Sbjct:  381 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -3
Query:  283 KIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 405
            +IPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  G+Y+LR
Sbjct:  381 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -3
Query:  283 KIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 405
            +IPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  G+Y+LR
Sbjct:  381 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = -3
Query:  283 KIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 405
            +IPYFT SGIQVRYLKIIEKSGY ALPWVRYIT  G+Y+LR
Sbjct:  381 EIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 421          
BLAST of DC887617 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  283 PYV*NXKIPYFTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 423
            P +   +IPY+TVSGIQVRYLKIIEKSGY ALPWVRY+ ++G+Y+ R
Sbjct:  380 PIMVKFEIPYYTVSGIQVRYLKIIEKSGYQALPWVRYVCLSGDYQFR 426          
The following BLAST results are available for this feature:
BLAST of DC887617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AP1M2_HUMAN1.351e-1467.27AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M2_BOVIN1.351e-1467.27AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP1M_CAEEL1.765e-1474.00AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP1M2_MOUSE3.010e-1482.93AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]
AP1M1_RAT1.144e-1382.93AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP1M1_MOUSE1.144e-1382.93AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M1_HUMAN1.144e-1382.93AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN1.144e-1382.93AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M_DICDI2.548e-1368.09AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
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Properties
Property NameValue
Genbank descriptionDC887617 EIC Citrus sinensis cDNA clone EIC0634 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887617 ID=DC887617; Name=DC887617; organism=Citrus sinensis; type=EST; length=449bp
CGGGTCCAAAAAGAAAAGAAAANANAGANAAAATCTAACTCNTGTAATTT
GCCCAAAAAGGGTGATGCGCAGACCCAACTCCTACAAAACTAGTTGATAA
AAAAATGATAATTAACAGATAAATGTATGCCAATAAGTTTTCTTCGCAAA
TCTATGGTGGGGGAGAGAGTTCTTATGGTGATCCTGGTGTATCCACTANA
TTTTTCTGTGTCATCGATGAATCAATCTCATAAATTCGATTTGGTGACAT
TGAAGTACCAATAGTTCTGGCATTCAGATAAGCCTTAGTTCATACTCACC
AGCCATTGTTATGTACCTCACCCATGGAAGAGCGTGATAACCACTTTTCT
CTATAATTTTCAGGTACCGGACCTGTATTCCTGAAACAGTAAAGTATGGT
ATTTTCNAATTTCACACGTATGGGAGCCTTTCTCTCAGGAGTTGCTTCT
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