CN184927

Overview
NameCN184927
Unique NameCN184927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.676e-51
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = -3
Query:  166 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 468
            AKVVVLDIRFP LPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV
Sbjct:  246 AKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346          
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 7.287e-49
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = -3
Query:  166 AKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 468
            AK+VVLDIRFP LPVVELQRHQASVNAIAWAPHSS HIC+AGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAE+EQLQWSSSQPDWVAIAFS KLQILRV
Sbjct:  246 AKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346          
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.022e-34
Identity = 67/100 (67.00%), Postives = 83/100 (83.00%), Query Frame = -3
Query:  166 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 465
            KVV+LDIR PT+PV EL+RHQASVNAIAWAP S  HIC+ GDD+QALIW+L ++  P   G+DP+  Y+AG+EI QLQWSSSQPDW+ IAF+ K+Q+LRV
Sbjct:  244 KVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGP--NGIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341          
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.276e-34
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  166 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 465
            KV++LDIR P++P  EL  H+++VN I+WAPHSSCHICT  DD QALIWDLSSM +P+E   DP+L Y A AEI QL WSSSQPDW+AIAFS+ LQIL+V
Sbjct:  229 KVIILDIRVPSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYNALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325          
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.017e-31
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = -3
Query:  166 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 465
            +VV+LD+R P  PV  L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  +QW+S+QPDW+AI ++  L+ILRV
Sbjct:  246 EVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
BLAST of CN184927 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.017e-31
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = -3
Query:  166 KVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 465
            +VV+LD+R P  PV  L  H+A VN IAWAPHSSCHICTA DD QALIWD+  M + +E   DPILAYTA  EI  +QW+S+QPDW+AI ++  L+ILRV
Sbjct:  246 EVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
The following BLAST results are available for this feature:
BLAST of CN184927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LWD1_ARATH2.676e-5197.03WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH7.287e-4992.08WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
TTG1_ARATH1.022e-3467.00Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
DCAF7_DICDI2.276e-3467.00DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
DCAF7_MOUSE4.017e-3161.00DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN4.017e-3161.00DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184927 ID=CN184927; Name=CN184927; organism=Citrus sinensis; type=EST; length=470bp
AAGTAGATCAATTATATTGATCACCGAGTCTTCGACTCTAATCAATTAAG
ATCAACAACAATAATCACTAGAAGGGTGTTACACGGCTTTGTTCAGACAA
CACATTTTTCTTAATCAACAAAGAAATCAGTTTCTACATGAGCTAGTCAT
CATTATCATTTATCATACCCTGAGAATCTGAAGCTTAGTGGAGAATGCAA
TGGCAACCCAGTCAGGCTGTGAAGACGACCACTGCAGCTGCTCAATCTCC
GCCCCAGCTGTGTATGCCAGAATAGGATCCAACCCGCCTTCCACCGGCTG
ACCCATCGACGACAAGTCCCATATCAACGCCTGTGAGTCATCCCCAGCCG
TGCATATGTGGCAAGAACTGTGTGGGGCCCACGCAATGGCGTTCACACTC
GCCTGGTGCCTCTGCAGCTCCACAACCGGCAGCGTCGGGAAGCGAATGTC
GAGAACCACCACCTTCGCGC
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