CN184914

Overview
NameCN184914
Unique NameCN184914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL 427
            +++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ RGI FP  D ++L+PI TP RSV E +  AT+
Sbjct:   34 MEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATI 178          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.937e-16
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL 427
            +++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +G+ FP  D ++L+PI TP RSV E +  AT+
Sbjct:   34 MEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATM 178          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE 412
            +++CD+IN  +    D +R +KKR+   ++ R   LAL +LET VKNC   F      R     +L +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +GI FP  D ++L+PI TP RSV E +
Sbjct:   34 MEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVD 173          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 50/142 (35.21%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE 412
            +++CD+IN  +    D  R +KKRIM  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V++  K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E
Sbjct:   34 MEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHD--KVLNLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSE 173          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.030e-13
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEV----DATLAEQIQRDIRGQ 460
            +++CD+IN  +    D +R +KKRI+  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V++  K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E     D+   +  Q++  GQ
Sbjct:   34 MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHD--KVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQ 193          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSV 400
            +++CD+IN  +    D  R IKKRI+  K+     LAL +LET VKNC   F  + A     E VL   +   ++P  +V++  K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP RSV
Sbjct:   34 MEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHD--KVLTLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSV 169          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN---RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDN--ESLAPIFTPP 391
            L++ D+I ++ +   D ++ +KKRI  K+P +Q   L L +T VKN    F  E+A+   +D +  L+  P T+  N   +NK L +I++W  +      L    E Y+SL+  G  FP ++N   S+     PP
Sbjct:   32 LEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSWATAAEGRMNLGYINEVYRSLQREGYHFPPKENIASSMLDSSAPP 166          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 349
            L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:   29 LQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 349
            L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:   29 LQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CN184914 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    5 LDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 349
            L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:   29 LQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
The following BLAST results are available for this feature:
BLAST of CN184914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TM1L2_MOUSE1.697e-1636.73TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN4.937e-1635.37TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_XENLA3.538e-1433.80TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TOM1_MOUSE7.883e-1435.21Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_HUMAN1.030e-1332.72Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_CHICK8.715e-1335.51Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
VPS27_PHANO1.138e-1231.11Vacuolar protein sorting-associated protein 27 OS=... [more]
HGS_RAT4.782e-1132.76Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE4.782e-1132.76Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN8.157e-1132.76Hepatocyte growth factor-regulated tyrosine kinase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184914 ID=CN184914; Name=CN184914; organism=Citrus sinensis; type=EST; length=600bp
GAGGCTCGATCTCTGTGACATGATCAATACCGAGAAAATCAGCAGTGTTG
ATTTGATCCGTGGCATAAAGAAAAGGATCATGTTGAAGAGCCCTAGGATT
CAGTATTTGGCCTTGGTACTGCTTGAAACAGTTGTTAAAAACTGTGAGAA
GGCCTTCTCCGAGGTGGCAGCTGAGAGGGTTCTTGATGAAATGGTCAAGC
TGATTGATGATCCTCAAACTGTTGTCAATAATAGGAACAAGGCTTTGGTG
ATGATTGAAGCTTGGGGTGAGTCCACAAGCGAACTTCGATACTTGCCCGT
ATATGAAGAAACATACAAGAGTTTAAGATCACGGGGCATCCGGTTTCCGG
GACGTGACAATGAGAGCTTGGCGCCTATTTTTACACCTCCTCGTTCAGTT
TCAGAAACAGAAGTGGATGCTACTCTTGCTGAGCAGATTCAGCGTGATAT
TCGTGGGCAAAGCTTTACCAAAGAACAAACAAAGGAAGCCTTTGATGTTG
CAAGAAACAGTATCGAGCTTCTTTCAACTGTTCTATCATCCTCACCCCAA
CAAGACGCTTTACAGGATGACTTGACAACTACACTAGTGCAACAGTGTCG
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