CN184902

Overview
NameCN184902
Unique NameCN184902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2442 contig Csv1_Contig2442:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.786e-23
Identity = 70/208 (33.65%), Postives = 104/208 (50.00%), Query Frame = 3
Query:  135 PNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYH 758
            PN ++        ++  + + +   S+P K F + T         ++  H   +K +K+I S       E L MID +Q LG +  F+  IE+ L   Y       G LH   E+ALRFRLLRQEG+YV   +F N + K+G F    V  D+  L E++EAS+L + GEE LD A +F+   LNE  +  + +Q   I  +L  P H
Sbjct:   31 PNTVDSLSPANTAKRSILRNVHASVSNPSKQFHNKT--------SLEYSHELNIKKIKNILSANVDVPSENLEMIDVIQSLGTDLHFRQGIEQTLHMIYKEGLQFNGDLH---EIALRFRLLRQEGHYVQESIFKNILDKKGGFKDV-VKNDVKGLTELFEASELRVEGEETLDGAREFTYSRLNELCSGRESHQKQEIMKSLAQPRH 226          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  282 HSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 746
            H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ GY V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L + GE+ LDEA  F+   L+  ++ LDH  +  + + L+
Sbjct:   52 HQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVSSLDHPLSEEVSHALK 202          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.489e-19
Identity = 55/160 (34.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 746
            + +  H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   ++RFRLLR+ GY V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L + GE+ LDEA  F+   L+  +  LDH  +  + + L+
Sbjct:   47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALK 202          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 55/160 (34.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 746
            + Q  H +  ++++ +      NS   L  ID+VQ LG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ G++V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L + GE+ LDEA  F++  L+  +  LDH  +  + + L+
Sbjct:   47 ETQKRHQQLKEEVRKMIVAPMANSTLKLAFIDSVQGLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGFHVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHGEDILDEAISFTSNHLSLAVASLDHPLSEEVSHALK 202          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.650e-19
Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  267 DIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 746
            + +  H +  ++++ +      NS + L  ID+VQRLG+ Y F  EIE+ L+  Y  ++      +DL   +LRFRLLR+ G+ V  D+FN F  ++G F   +V+ D+  L+E+Y+AS L + GE+ LDEA  F+   L+  +  LD+  +  + + L+
Sbjct:   47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKS-SVTSDVRGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVASLDYPLSEEVSHALK 202          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 68/230 (29.57%), Postives = 106/230 (46.09%), Query Frame = 3
Query:   87 TSHISKDPDKISKTSRPNLIEFTPSPTIYQKGCITSDNTVASSPLKHFTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDH------NQALAIGNTLRHPYH 758
            TS+I+    +      P       SP+      I   +     P+  F      P  ++ +     S KLK+      +   NS   L +ID +QRLGI Y F++EI  IL+  +   ST     +DL   AL FRLLR+ GY +P ++FN+F  + G+F     ++DI  ++ +YEAS     GE  L+EA  F+ + L   +  +D       N A+ + + L  P H
Sbjct:   37 TSNITTKKSRSRPNCNPIQCSLAKSPSS-DTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEASFYVKNGENILEEARVFTTEYLKRYVMMIDQNIILNDNMAILVRHALEMPLH 265          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 84/243 (34.57%), Postives = 122/243 (50.21%), Query Frame = 3
Query:   75 KLSGTSHISKDPDKISKTSRPNLIEFTPSPTIYQKGCITSDN---TVASS----------PLKHFTHTTRHPSFFEHDIQVEHSRKL-KDLKHIFSLVG-GNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFM-IKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLN--ECMTHLDHNQALAIGNTLRH 749
            K S TS ISK   K+   S+ NL   + S T Y   C   DN   T+ ++          P+  F      P  ++ +       KL KD+K +  L+G  NS   L +ID +QRLGI Y F++EI  IL+ ++  ++      +DL   AL+FRLLRQ G+ VP ++FNNF   K G F + N+S DI   + +YEAS     GE  L+EA  F+ K L   + M+  ++N    I   + H
Sbjct:   28 KTSITS-ISKPKPKLK--SKSNLKSRSRSSTCYSIQCTVVDNPSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRM--LIGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEF-KANISNDIMGALGLYEASFHGKKGESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNH 264          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.377e-17
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  333 NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLR 746
            +S + L  IDAVQRLG+ Y F+ EIE+ L+  Y  ++       DL   ALRFRLLR+ G+ +  D FN F  + G F   +++ D+  L+E+YEAS + + GE+ LDEA  F+   L   +  L H  +  +G+ L+
Sbjct:   68 DSNQKLPFIDAVQRLGVSYHFEKEIEDELENIYRDTNNNDADT-DLYTTALRFRLLREHGFDISCDAFNKFKDEAGNFKA-SLTSDVQGLLELYEASYMRVHGEDILDEAISFTTAQLTLALPTLHHPLSEQVGHALK 203          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.916e-17
Identity = 68/203 (33.50%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  198 NTVASSPLKHFTHTTRHPSFFEHD----IQVEH-----SRKLKDLKHIFSLVGG---NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHL---HDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECM-THLDHNQALAIGNTLRHPYH 758
            N V++SP          PS + HD    +++E+     +R++  LK    ++     N  E L +I+ +QRLG+ Y F++EI+ IL   Y  ++  GG      +L   AL+FRLLRQ GY V  ++FN+F  + G F    + ED   ++ +YEAS   I GE  L+EA  FS K L E +  + + N A  + ++L  P H
Sbjct:   47 NKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVY--NNDHGGDTWKAENLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKAC-LCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYVKQNKEKNLATLVNHSLEFPLH 246          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 59/182 (32.42%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  252 SFFEHDIQVE-----HSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQR--------QYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYH 758
            SF + D+  E     HS   + +K  F     N  E +  IDA+ RLG+ Y F+ +I E L +        Q +    C     DL  V + F++ RQ G+ + AD+F  F  + G+F    V++  G ++ +YEA+Q    GE+ +DEA  FS   L E  +    + A+ I N L+HPYH
Sbjct:   23 SFSKSDLGTETFKEKHSTLKEAVKEAFMSSKANPIENIKFIDALCRLGVSYHFEKDIVEQLDKSFDCLDFPQMVRQEGC-----DLYTVGIIFQVFRQFGFKLSADVFEKFKDENGKFKGHLVTDAYG-MLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKHPYH 198          
The following BLAST results are available for this feature:
BLAST of CN184902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
LINS_ARATH3.786e-2333.65Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
DCS4_GOSAR6.683e-2036.13(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSAR1.489e-1934.38(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS1_GOSHI5.658e-1934.38(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
DCS2_GOSAR9.650e-1933.75(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
TPS2_CANSA2.150e-1829.57(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
TPS1_CANSA2.150e-1834.57(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
DCS3_GOSAR2.377e-1738.41(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
MYRS_QUEIL6.916e-1733.50Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
HUMS_ARATH2.012e-1632.42Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006F06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184902 ID=CN184902; Name=CN184902; organism=Citrus sinensis; type=EST; length=760bp
GAGGCTCATTTCTTCAGAGAAATATTATAAAGAAGCATATATATTCGATG
GCTTTCTCTTCCAGTTCTAGAGCAAAGTTGTCCGGTACCTCCCACATTTC
AAAGGATCCAGATAAGATTTCAAAAACTAGCAGACCTAACCTCATTGAAT
TTACTCCTTCGCCTACTATCTATCAAAAAGGGTGCATTACTAGTGACAAT
ACAGTCGCTTCTTCTCCCCTTAAACACTTCACCCACACAACTAGACACCC
CAGCTTCTTCGAGCATGATATTCAAGTCGAACATTCTCGGAAACTGAAGG
ATCTCAAGCACATATTTAGCCTAGTCGGGGGAAATTCTTTTGAAGGATTA
GTCATGATTGATGCTGTTCAACGGCTAGGCATTGAGTACCTTTTCAAAGA
TGAGATTGAAGAAATTTTACAAAGGCAATATATCATATCTTCCACTTGTG
GTGGTCACCTCCATGATCTTCAAGAGGTTGCCCTTCGCTTTCGGCTGCTG
AGACAAGAAGGTTACTACGTGCCTGCGGATATGTTTAACAACTTTATGAT
CAAGGAAGGGAGATTCAGCCAGTTCAACGTAAGTGAAGACATAGGGAGAT
TGATGGAAGTATATGAAGCTTCGCAGCTAAGTATAGCAGGCGAAGAAGGG
CTTGACGAAGCTGGACAATTTAGTGCGAAGATGCTCAATGAGTGCATGAC
ACATCTTGATCACAATCAAGCTCTAGCTATCGGGAATACGTTGAGGCATC
CATACCACAA
back to top