CN184882

Overview
NameCN184882
Unique NameCN184882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 68/183 (37.16%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  110 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLYKDI 619
            D  S+ LT D R G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DEIDFEFLG   + +  VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP+KPM LY ++WD S     +W   G   G +   APY+  + D+
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGS-----KWATNGGKYGVNYKYAPYIARFSDL 226          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 69/183 (37.70%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  110 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGN--REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLYKDI 619
            D  S+ LT D R G+ + S   +L+G FSS I+ P   ++G+    YLS+ +  +K+ DEIDFEFLG     +  +QTN Y  G+ +  REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP KPM LY+++WD S     +W   G   G +   APYV  + D+
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGS-----KWATDGGKYGVNYKYAPYVSQFTDL 226          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.191e-21
Identity = 64/187 (34.22%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  101 HCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 625
            H  D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  I + +DG  +R  +  E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   45 HDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21
Identity = 66/182 (36.26%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  116 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 625
            + + L  D   G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y I W    I + +D   +R  +  ++ G  FP N+PM LY+S+W+A        ++K  W       +AP+V  YK  H+
Sbjct:   55 SELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNW------ANAPFVASYKGFHI 228          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 56/149 (37.58%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  152 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPY 598
            A +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG +   A  N     P+ P  +  ++W+ + +D   W G Y G +  Y
Sbjct:   85 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTPGKIMMNLWNGTGVDD--WLGSYNGANPLY 226          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.528e-21
Identity = 62/184 (33.70%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  110 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 625
            D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG  +R  + +E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 70/197 (35.53%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  122 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYASVWDASH------IDKARWC-GPYVGCDAPY----VCLYKDIHVPVATAVECPCDS 661
            + L  D   G+ ++S   +LYG     I+   GN++G     YL S     + DEIDFEFLG    D  IV TN YT G G+RE+   L FD +  FH Y I W P  I + IDGK +R  +  E  G  +P N+PM +Y S+W+A        + K  W  GP+V     Y     C++  ++    T+   P DS
Sbjct:   50 LNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQ--GLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDS 244          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 63/182 (34.62%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  116 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 625
            N ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  + + IDG  +R  + +E  G P   ++PM LYAS+W+A H      ++K  W        AP+   Y++ +V
Sbjct:   50 NLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAFYRNYNV 223          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 63/182 (34.62%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  116 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHV 625
            + + L  D   G  ++S   +L+G FS  I+ P G+T+G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD S+ +H Y + W    I + +D   +R  +  ++ G  FP N+PM LY+S+W+A        ++K  W       +AP++  Y+  H+
Sbjct:   54 SELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNE--HDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNW------ANAPFIASYRGFHI 227          
BLAST of CN184882 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.009e-20
Identity = 66/203 (32.51%), Postives = 96/203 (47.29%), Query Frame = 2
Query:  101 HCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARWCGPYVGCDAPYVCLYKDIHVPVATAVE----CPCDS 661
            H      ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG  +R     E  G P    +PM LYAS+W+A H      ++K  W        AP+   Y++ +V     V     CP +S
Sbjct:   40 HDNQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDW------SKAPFTAYYRNYNVEGCVWVNGKSVCPANS 234          
The following BLAST results are available for this feature:
BLAST of CN184882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
XTH27_ARATH1.078e-2237.16Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH9.123e-2237.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH1.191e-2134.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH2.032e-2136.26Xyloglucan endotransglucosylase/hydrolase protein ... [more]
GUB_PAEMA2.654e-2137.58Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
XTH18_ARATH4.528e-2133.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH5.913e-2135.53Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH5.913e-2134.62Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB1.009e-2034.62Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH19_ARATH1.009e-2032.51Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184882 ID=CN184882; Name=CN184882; organism=Citrus sinensis; type=EST; length=750bp
GAGGCTTGAACTTGAAATGGCGGATCCAGTTGTCCAGAGTCTCCATCAAA
CTGAACCCATAAAAGAAATCGCCATAGATTACACCCCGGAAGCATGCACT
CACTGCGCAGACTCCAATTCGATCACACTCACCTTCGATCACCGCGGCGG
AGCCAGGTGGCGCTCCACCACTCGCTTCCTCTACGGCACCTTCAGCTCCC
TGATCCAGTGCCCCAAAGGCAACACTAGTGGCCTCAACTTCAACATCTAC
CTTTCTTCTCTAGAAGGCGACAAATCCCAAGACGAAATCGACTTTGAATT
CCTTGGCAAGGACAAGACTATCGTTCAAACCAATTATTACACTACAGGAA
CCGGGAATAGAGAGGAGATTCATGATCTGGGGTTCGATTGTTCTGAAGGA
TTTCATGAGTACGTGATCAAGTGGGGTCCAGATTTGATCCAGTGGTTGAT
TGATGGGAAGGTGGTGAGGAGAGCTGAGAGGAACGAGGGTGAGGGGTTTC
CCAATAAACCAATGTTTTTGTATGCTTCAGTTTGGGATGCTAGCCACATT
GATAAGGCCAGGTGGTGTGGGCCCTACGTGGGCTGTGATGCACCTTATGT
TTGCCTCTACAAAGACATTCATGTGCCTGTTGCCACTGCGGTGGAGTGCC
CTTGTGATTCTTGATTTGGTGAGTGGCGTATTTGAGTTGTTCTGATGTTT
TCTTGGGATTTTGTTCTTCCATTTTACAATGTCTTTTCATCAATCGGATT
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