CN184836

Overview
NameCN184836
Unique NameCN184836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.194e-74
Identity = 127/140 (90.71%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFSH DVVAEEPWYGIEQEYTLLQKDV WPLGWP+GG     G
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 4.663e-73
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+FS+ DV AE PWYGIEQEYTLLQKDVKWP+GWPIGG     G
Sbjct:   16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWPIGGYPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.954e-73
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIWIGGSG+D+RSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSH DVVAE PWYGIEQEYTLLQKD+ WPLGWP+GG     G
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.314e-72
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS+ DVVAEEPWYGIEQEYTLLQ+D+ WPLGWPIGG     G
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.948e-72
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TDKIIAEYIWIGGSG+DMRSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRRG+NILV+CDAYTPAGEPIPTNKRHAAAK+FSH DVVAE PWYGIEQEYTLLQK+V WP+GWPIGG     G
Sbjct:   16 TDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKEVNWPVGWPIGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.794e-72
Identity = 123/140 (87.86%), Postives = 132/140 (94.29%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            ++KIIAEYIW+GGSGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF++ DV+AE PWYGIEQEYTLLQKDV WPLGWPIGG     G
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.700e-71
Identity = 123/140 (87.86%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPLGWPIGG     G
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.723e-71
Identity = 120/140 (85.71%), Postives = 131/140 (93.57%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRHAAAKIFSH DVVAEEPW+GIEQEYTLLQKD+ WP+GWP+GG     G
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIFSHPDVVAEEPWFGIEQEYTLLQKDIHWPIGWPLGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.723e-71
Identity = 121/140 (86.43%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TDK+IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF H DV AEEPWYG+EQEYTLLQKDV+WPLGWP+GG     G
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQG 155
[Close]
BLAST of CN184836 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.723e-71
Identity = 121/140 (86.43%), Postives = 130/140 (92.86%), Query Frame = 1 
Query:  208 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGLSWASG 627
            TD+IIAEYIWIGGSG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF    VVAEE WYGIEQEYTLLQKD+KWP+GWP+GG     G
Sbjct:   16 TDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWPVGGFPGPQG 155
The following BLAST results are available for this feature:
BLAST of CN184836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_VIGAC7.194e-7490.71Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLN11_ARATH4.663e-7390.00Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_MEDSA7.954e-7388.57Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA_NICPL2.314e-7289.29Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA1_LOTJA3.948e-7288.57Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLN12_ARATH8.794e-7287.86Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA4_MAIZE5.700e-7187.86Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA_LUPLU9.723e-7185.71Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA2_SOYBN9.723e-7186.43Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLN14_ARATH9.723e-7186.43Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184836 ID=CN184836; Name=CN184836; organism=Citrus sinensis; type=EST; length=709bp
GAGGCTTTTTTATTGTCAACACTGCGAAACCGCACTATAAAAGCCAGGCA
ACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCACATTAACATCCCTTC
AATCACAGTAATCTCATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAG
AGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTC
AGAATCCACTGACAAGATCATCGCTGAGTACATATGGATCGGTGGATCTG
GCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGAT
CCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGC
ACCTGGAGAAGATAGTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGG
ATCCATTCAGGAGAGGCAACAATATTCTTGTTATGTGTGATGCTTACACT
CCTGCGGGGGAACCAATTCCAACAAACAAAAGACATGCAGCTGCCAAGAT
TTTCAGCCATTCTGACGTTGTGGCTGAAGAACCATGGTATGGTATTGAGC
AGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTTGGCTGGCCC
ATCGGTGGGTTATCCTGGGCCTCAGGGACCATACTACTGTGGTGTTGGTG
CTGACAAAGCTTGGGGGGCGCGACATTGTAGAACTCCCATTTACAAGGCC
TGTCTATAT
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