DC887526

Overview
NameDC887526
Unique NameDC887526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5506 contig Csv1_Contig5506:11..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.545e-57
Identity = 109/124 (87.90%), Postives = 118/124 (95.16%), Query Frame = -3
Query:  322 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 693
            +GNHVA+T+GGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIGPSD
Sbjct:  376 MGNHVAVTIGGSNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.545e-57
Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = -3
Query:  322 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 693
            +GNHVA+TVGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIGPSD
Sbjct:  369 MGNHVAVTVGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 84/122 (68.85%), Postives = 102/122 (83.61%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  385 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 84/122 (68.85%), Postives = 102/122 (83.61%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  388 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 84/122 (68.85%), Postives = 102/122 (83.61%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  388 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.658e-43
Identity = 85/122 (69.67%), Postives = 101/122 (82.79%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPMI   +L+S RLLGDAS SF  NCV GI+AN ERI+KL+ ESLMLVT+LNP IGYD AA +AK AHK+G+TLK+AALKLG LN ++F+  V P  M+GP
Sbjct:  387 MGNHVAVTVGGSNGHFELNVFKPMIIKNVLNSARLLGDASVSFTNNCVVGIEANTERINKLMSESLMLVTALNPHIGYDKAAKIAKTAHKDGSTLKEAALKLGFLNEQQFEEWVRPHDMLGP 508          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 84/122 (68.85%), Postives = 101/122 (82.79%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P+ M+GP
Sbjct:  385 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.075e-42
Identity = 83/122 (68.03%), Postives = 100/122 (81.97%), Query Frame = -3
Query:  328 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 693
            +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDA+ SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P  M+GP
Sbjct:  344 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGP 465          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.112e-39
Identity = 81/124 (65.32%), Postives = 97/124 (78.23%), Query Frame = -3
Query:  322 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 693
            +GN+ AI+V GSNG FELNVFKP++   L+ S+RL+ DAS SF KNCV GI+AN ++IS +++ESLMLVT+LNP IGYD AA  AKKAHKEGTTLK+AAL LG L SEEFD  V PE MI   D
Sbjct:  371 MGNNTAISVAGSNGQFELNVFKPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLVTALNPHIGYDKAAKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAKD 494          
BLAST of DC887526 vs. ExPASy Swiss-Prot
Match: FUMC1_BRAJA (Fumarate hydratase class II 1 OS=Bradyrhizobium japonicum GN=fumC1 PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 7.209e-39
Identity = 77/121 (63.64%), Postives = 97/121 (80.17%), Query Frame = -3
Query:  328 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 690
            GNH AITV GS GHFELNV+KP++A  +LHS+RL+ DA+ SF ++CV GI+A+ +RIS+L+  SLMLVT+L PKIGYDNAA VAK AH  GTTLK+ AL+LG + ++EFD LV PEKM  P
Sbjct:  352 GNHTAITVAGSQGHFELNVYKPVLAYNMLHSIRLMADAARSFTEHCVSGIRADEKRISELMQRSLMLVTALAPKIGYDNAAKVAKTAHANGTTLKEEALRLGFVTADEFDRLVQPEKMTKP 472          
The following BLAST results are available for this feature:
BLAST of DC887526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUM2_ARATH1.545e-5787.90Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUM1_ARATH1.545e-5788.71Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUMH_MOUSE9.721e-4468.85Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_MACFA9.721e-4468.85Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN9.721e-4468.85Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_DANRE1.658e-4369.67Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_RAT2.166e-4368.85Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_PIG1.075e-4268.03Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_RHIOR1.112e-3965.32Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMC1_BRAJA7.209e-3963.64Fumarate hydratase class II 1 OS=Bradyrhizobium ja... [more]

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Properties
Property NameValue
Genbank descriptionDC887526 EIC Citrus sinensis cDNA clone EIC0501 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887526 ID=DC887526; Name=DC887526; organism=Citrus sinensis; type=EST; length=695bp
TATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAGGTCT
TCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATGACAT
ATCACTGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTTTTTG
GTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATTTGGA
TCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCGCAGA
AACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAGGAGT
TTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCAGGTA
CCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAATGCA
GCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTGCCGC
AGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATCAATG
ACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCCTCTC
ACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCAGTGA
ATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCAAAAT
GGCCATTTGATCCACCCACTGTGATGGCCACATGGTTCCCAATAA
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