CN184827

Overview
NameCN184827
Unique NameCN184827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 426.017 bits (1094), Expect = 1.260e-118
Identity = 203/226 (89.82%), Postives = 219/226 (96.90%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFVND +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQ++DGQIIEPHSISAGLDYPGVGPEHSF KD GRAEYY++TD+EALEAFKR SRLEGIIPALET+HALAYLEKLCPTL+DGT+VV+NFSGRGDKDVQT  KYL V
Sbjct:  245 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 423.32 bits (1087), Expect = 8.168e-118
Identity = 202/226 (89.38%), Postives = 221/226 (97.79%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR+QA+EKWGGKPDVL+ACVGGGSNAMGLFHEFV+D +VR+IGVEAAGFGLDSGKHAATL+KG+VGVLHGA+SYLLQ++DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEY++VTD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL DG +VV+NFSGRGDKDVQTAIKYL+V
Sbjct:  250 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.179e-116
Identity = 203/226 (89.82%), Postives = 219/226 (96.90%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVE+THYILGSVAGPHPYPMMVR+FHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV+DKDVR+IGVEAAGFGLDSGKHAATL+KGEVGVLHGA+SYLLQ++DGQIIEPHSISAGLDYPGVGPEHSFLKD GRAEYY  TD+EALEAFKR SRLEGIIPALET+HALA+LEKLCPTL +GTKVV+N SGRGDKDV TAIK+LQV
Sbjct:  241 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV 466          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 5.128e-112
Identity = 193/226 (85.40%), Postives = 213/226 (94.25%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVR+FH VIGKETRRQA++KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRL+G+EAAG G+D+ KHAATL+KG+VGVLHG++SYLLQ++DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTLADG +VVVN SGRGDKDV TA KYL V
Sbjct:  218 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLVGLEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKYLDV 443          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.545e-111
Identity = 193/226 (85.40%), Postives = 211/226 (93.36%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVR+FH VIGKETRRQA+ KWGGKPDVL+ACVGGGSNAMGLFHEFV D+DVRLIGVEAAG G+D+ KHAATL+KG+VGVLHG++SYLLQ++DGQ+IEPHSISAGLDYPGVGPEHSFLKD GRAEY +VTD EAL+AFKR SRLEGIIPALET+HALAYLEKLCPTL DG +VV+N SGRGDKDV TA KYL V
Sbjct:  164 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLIGVEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKYLDV 389          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 1.353e-104
Identity = 181/224 (80.80%), Postives = 204/224 (91.07%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  ++LIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQ+EDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD+EAL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++V+N SGRGDKDVQT  K+L
Sbjct:  187 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKFL 410          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.767e-104
Identity = 180/224 (80.36%), Postives = 204/224 (91.07%), Query Frame = -1
Query:  165 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFVN+  +RLIGVEAAG G+++ KHAATL+KG VGVLHGA+SYLLQ+EDGQ+IE HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD++AL AF+R SRLEGIIPALETAHA+AYLE LCP L    ++++N SGRGDKDVQT  K+L
Sbjct:  187 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKFL 410          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.145e-103
Identity = 180/225 (80.00%), Postives = 201/225 (89.33%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG ETR Q LEKW G PD+L+ACVGGGSNAMGLFHEF+ND  VR+IGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQ+E+GQIIEPHSISAGLDYPGVGPEHSFLKD GR EYY+VTD+EA+ AF+R S+LEGIIPALETAHA+AYLE LCP L+   ++V N SGRGDKDVQT  K+L+
Sbjct:  184 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPSVRMIGVEAAGKGVDTNKHAATLTLGRVGVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAAFQRLSQLEGIIPALETAHAIAYLETLCPQLSGSPRIVFNCSGRGDKDVQTVGKFLE 408          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 9.073e-101
Identity = 175/225 (77.78%), Postives = 199/225 (88.44%), Query Frame = -1
Query:  162 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPM+VR+FHAVIG ETR+Q LEKWGG PD+L+ACVGGGSNAMGLFHEFV +  VRLIGVEAAG GLD+G HAATL+KGEVGVLHGA+SYLLQ+ DGQ++E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A  R ++LEGI+PALETAHALAYLE LCP L    ++V+N SGRGDKDV+T  +Y +
Sbjct:  184 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGLDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFE 408          
BLAST of CN184827 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.185e-100
Identity = 173/226 (76.55%), Postives = 202/226 (89.38%), Query Frame = -1
Query:  159 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 836
            KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH VIG+ETR+QAL+KWGG PD+L+ACVGGGSNAMGLF++F+++  VRLIG+EAAG  + SGKHAATL+ G+ GVLHGA+SYLLQ+++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEYY+VTD EA+ A +R S+LEGIIPALETAHA AYLE LCP L +G ++V+N SGRGDKDVQT  KYLQ+
Sbjct:  185 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHRVIGQETRQQALKKWGGLPDILLACVGGGSNAMGLFYDFIDEPAVRLIGIEAAGESIVSGKHAATLTMGKPGVLHGAMSYLLQDKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKYLQM 410          
The following BLAST results are available for this feature:
BLAST of CN184827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
TRPB1_ARATH1.260e-11889.82Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH8.168e-11889.38Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC1.179e-11689.82Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE5.128e-11285.40Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE2.545e-11185.40Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_ANASP1.353e-10480.80Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_ANAVT1.767e-10480.36Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_TRIEI1.145e-10380.00Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_THEEB9.073e-10177.78Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_SYNY31.185e-10076.55Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006D01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184827 ID=CN184827; Name=CN184827; organism=Citrus sinensis; type=EST; length=836bp
GAGGGTAATATATAAAGTTTTAACTCAAATTACATAAGATGGTTCTCACA
TCTCTGAAATAACTAATGATACAAAATTCAAAAACAGAAGCTCAAGCAAC
CCATTTATTTGTTTTCAGTAAATGAATCATATATTGTGGGTTACAAGCAT
TACCATCAAACTTGCAAATATTTGATCGCTGTCTGGACATCCTTGTCACC
TCTGCCACTGAAGTTAACCACAACCTTAGTACCATCAGCAAGAGTTGGGC
ATAGCTTCTCCAAATAAGCCAATGCATGAGCAGTCTCCAAAGCTGGGATT
ATACCCTCTAGCCGTGATGACCTCTTGAAAGCTTCCAATGCTTCATCATC
TGTGACATTATAGTACTCAGCACGCCCTTCATCTTTCAGAAAACTATGCT
CAGGTCCAACTCCAGGGTAATCTAAGCCTGCACTAATGGAGTGTGGCTCA
ATTATTTGCCCATCTTCATTCTGCAACAAATAGCTCAAAGCACCATGCAA
CACCCCAACTTCTCCTTTGGACAAGGTAGCAGCATGTTTGCCACTGTCTA
GACCAAAACCTGCTGCCTCCACACCAATCAACCTAACATCCTTGTCATTA
ACAAATTCGTGGAAGAGACCCATGGCATTTGAACCACCACCAACGCATGC
AATCAGCACATCTGGTTTCCCACCCCATTTCTCCAATGCTTGTCTTCTTG
TTTCTTTTCCAATCACAGCATGGAAATCTCTGACCATCATGGGGTACGGA
TGAGGCCCGGCAACAGATCCCAGAATGTAATGGGTAGTTTCCACATTAGT
CACCCAGTCCCGTATAGCTTCTGATGTAGCATCCTT
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