DC887513

Overview
NameDC887513
Unique NameDC887513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1578 contig Csv1_Contig1578:434..1189. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887513 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.389e-19
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = -1
Query:  472 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFVNRKDAEVALQKLQGTAIGKQTVRLSWGRN 684
            +FVG L   VS+E+L+  F  FGEI+ VKIP GKGCGFVQFVNR+ AE+A+ +LQG  +G   +RLSWGRN
Sbjct:  305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of DC887513 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.454e-15
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  472 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFVNRKDAEVALQKLQGTAIGKQTVRLSWGRN 684
            +FVG L S++S++DL+  F  FG IL++KIP GKGCGFVQ+  +  AE A+  +QG  +G   +RL+WG N
Sbjct:  299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of DC887513 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  472 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFVNRKDAEVALQKLQGTAIGKQTVRLSWGRN 684
            +F+G L S V++++LR  F  FG I+ VKIPVGK CGFVQ+V+R  AE A+  +QG  I    VRLSWGR+
Sbjct:  315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of DC887513 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  475 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFVNRKDAEVALQKLQGTAIGKQTVRLSWGR 684
            +FVG L    ++  LR  F  FG IL+V+IP GK CGFV+F  R DAE ++Q LQG  +G   +RLSWGR
Sbjct:  362 VFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
The following BLAST results are available for this feature:
BLAST of DC887513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YG41_SCHPO7.389e-1960.56Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO8.454e-1549.30RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST1.883e-1453.52Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST4.639e-1351.43Negative growth regulatory protein NGR1 OS=Sacchar... [more]
back to top
Properties
Property NameValue
Genbank descriptionDC887513 EIC Citrus sinensis cDNA clone EIC0480 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887513 ID=DC887513; Name=DC887513; organism=Citrus sinensis; type=EST; length=756bp
GAAAACGTAAGTGATTTCAGGACCAAAACTGATGGTTNATTCAAGAGTTC
TGTTCTTGGCATTCTCCTCTTGAGTTTAGTTCAGAAACACAAACATAACA
ATCCCTCTCAAACAGACTCCCCAAGAATGAAAAATAATAATACAAGCCTC
ACACATCTCCAAGCTATTAAGTATATTCCAGCTACAAAATTCTGCAAACT
ACAGATTTAGCTACATATTCAGCAGCAAAATCCATCCTACTTTAGTTCAT
AGATCTCATTGGGTAATTTCAGCCAGTTCAGCAAGTTCAGATTACACGGT
GTCGTACTACCCTCATACTTCTTAAGAAGCACCGGGAACCGCTGTTGCAG
CATACATGTTTGGATCTTGATTTGGCGGAAAAGCATATCCATTGCCACTA
TAGCCCTGACCTCCATAGTGTGCCCCATTCCAGTGGTTACTGTGATCTCC
TCTCCACTGTTTGTTCCCAGGATTGCGACCCCAAGAAAGACGGACTGTTT
GCTTGCCTATAGCGGTCCCTTGTAACTTCTGCAATGCAACCTCAGCATCC
TTTCTGTTTACAAATTGCACAAATCCACATCCTTTACCAACAGGTATTTT
AACAGAAAGAATCTCACCAAACTGAGAAAAAGGCTCTCTGAGATCCTCAT
CACTGACATCAGAATCAAGTGCCCCAACAAATATCTGCAACAAAATACGA
GTTTAGAGTAAATGAGATACAGAGACTTGGCAATGATTACAAAAGCAGGG
AAAAGA
back to top