CN184802

Overview
NameCN184802
Unique NameCN184802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11053 contig Csv1_Contig11053:699..1531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.424e-21
Identity = 61/159 (38.36%), Postives = 97/159 (61.01%), Query Frame = -1
Query:  357 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 824
            AG+ATHFV SEK   LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS  TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  ++L E L  E+RL+   +R     D +EG+RA+ I+KD +PKW P
Sbjct:  210 AGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.142e-21
Identity = 63/191 (32.98%), Postives = 101/191 (52.88%), Query Frame = -1
Query:  285 LVAAGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE-------CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFG-EDLEL 833
            ++ AG+ATHFV S K PELEK LI L +  +  +   +  +    ++D +    K+ ++DE        FS  ++ EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   SL +    E+RL+   +R     D YEG+RA+ I+KD +P+W P              F+P G  DL+L
Sbjct:  206 VLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQE----KEFVLDEHMERINSIFSANSMEEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQACMR---GHDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNNDLKL 385          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = -1
Query:  351 GLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPT 821
            G+ATHFV SEK   LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V EI+++ +    K+G+ +     + L K SPT LK+T R + EG   SL E    E+RL+   +      D YEG+RA+ I+KD +PKW P T
Sbjct:  207 GVATHFVQSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLK----KDGSAFALKQAETLAKMSPTSLKLTFRQIEEGARMSLQEVFMMEYRLSQACMN---GHDFYEGVRAVLIDKDQSPKWKPST 359          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = -1
Query:  357 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 824
            AG+ATHFV SEK   LE+ L+ L +     V   +E +    ++D  +S++ ++ +  I+ CFS  TV +II++      ++G+ +    +K + K SPT LKITLR + EG  ++L E L  E+R+T   +      D +EG+RA+ I+KD  PKW P
Sbjct:  209 AGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLR----QDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.064e-19
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = -1
Query:  357 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL-DGQSVLNKQSI--IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 824
            AG+ATHFV SEK   LE+ L+ L +     V   +E +    ++   +S++ ++ +  I+ CFS  TV +I+++      ++G+ +    +K + K SPT LKITLR + EG  ++L E L  E+RLT   +      D +EG+RA+ I+KD  PKW P
Sbjct:  209 AGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLR----QDGSPFAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME---GHDFHEGVRAVLIDKDQTPKWKP 360          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 55/182 (30.22%), Postives = 88/182 (48.35%), Query Frame = -1
Query:  282 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFGEDLELQ 824
            AG+ATHFV +E    LEK +          + S + ++ +  +       +    I+  F K +V EI +  E     E + W    LK LK  SP+ L +    +++G +  SLA+CL+ EFR++ + L      D +EG+RAL ++KD  PKW PP+            F+P   + EL+
Sbjct:  205 AGVATHFVSNEHIQALEKEIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIFGKNSVKEIFEQLEL---LENSEWAKQTLKTLKSVSPSSLMVVFEQMKQGAKLPSLAKCLEMEFRISQHFLE---KPDFFEGVRALLVDKDKNPKWLPPSIDQIDQTLVNSYFKPLSNNKELK 380          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.629e-17
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = -1
Query:  357 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC---FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 824
            AG+ATHFV  EK   LE+ L+ L +  +  +   +E +    + D       +  +D+    FS  TV +I+ + +    ++G+ +    LK +KK SPT LKITLR + EG  ++L E L  E+RL+   ++     D +EG+RA+ I+KD +PKW P
Sbjct:  210 AGIATHFVDFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTVEQIVDNLQ----QDGSSFALEQLKVIKKMSPTSLKITLRQLMEGSSKTLPEVLIMEYRLSQACMK---GHDFHEGVRAVLIDKDQSPKWKP 361          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = -1
Query:  285 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXVFQPFG-EDLEL 824
            AG+ATHFV SEK   LE+ L+ + +  +  V   ++ + +      D   VL      I+  FS  TV EI+++ + +    G+ +    L+ L   SPT LKIT R ++EG   SL E L  E+RL+   +      D YEG+RA+ I+KD   KW P +            F   G  DL+L
Sbjct:  209 AGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKCD----GSSFAMKQLQTLSTMSPTSLKITFRQLKEGASMSLQEVLTMEYRLSQACMN---GHDFYEGVRAVLIDKDQKAKWKPESLEEVTEDYIDSCFTSLGSRDLKL 385          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.167e-15
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = -1
Query:  357 AGLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVLNKQ-SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDP 824
            AG+ATHFV SEK P LE+ L+ +    +  V   ++ +        D   VL +    I+  FS  +V  II++   +    G+ +    L+ L   SPT LKIT R ++EG   SL E L  E+RL+   ++     D YEG+RA+ I+K+   KW+P
Sbjct:  209 AGIATHFVESEKIPSLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIENLRCD----GSSFALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEYRLSQACMKGY---DFYEGVRAVLIDKNQNAKWNP 360          
BLAST of CN184802 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = -1
Query:  363 GLATHFVPSEKCPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL-NKQSIIDECFSKETVAEIIKSFEAEAGKEG--NGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 821
            G+ATHFVP    P LE RL  LNT D   + + I EF+E       +   +   +I++CF K    +II++ +  A        +    +K L   SPT + +T R ++   + S++E    +  ++  +L+     D  EG+ A  I K   PKW
Sbjct:  231 GIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWSISEAFYYDHIVSYYMLK---QPDFVEGVNAQLITKTKNPKW 383          
The following BLAST results are available for this feature:
BLAST of CN184802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HIBCH_HUMAN1.424e-2138.363-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK4.142e-2132.983-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE1.574e-2038.133-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE1.740e-1936.483-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT5.064e-1935.853-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI4.287e-1830.223-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN1.629e-1734.593-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA1.801e-1633.153-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR1.167e-1534.593-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO4.591e-1229.493-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006C03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184802 ID=CN184802; Name=CN184802; organism=Citrus sinensis; type=EST; length=833bp
GTATTAATAGACTGATATATGACGGAACGAACGGGGCAGTTAATTTTTCT
ATCCCAAGAAACTTCAGTTCTGATTATTGTTGAGTGTAACTACTAGTGAC
TTTTATTTCAAATGAAAGCATCTAGTACCATGATGATACTACATACTTGG
TGTTCATAACATAGAACGCCAGTAGAAACATGCAGACCAAAAATCTATTT
AGCTTCGGCTGTCACCTGTGAAGTTGCATATGCTGAATTCTCATATTTTC
CATCCCACCTGCAGTTTTCATTCTCTGGAATCTGGAGCTCTAAATCCTCT
CCAAATGGCTGGAAAACCAGATCCACTTTGTCATCGTCAACTTTATCAAG
CGTCGGTGGATCCCACTTTGGAGCATTATCCTTCTCAATGGTGAGAGCTC
TAATACCCTCATAGATATCTGCAGATATTATTGCTCGTAGTATGTTTATT
GTCAGCCTAAATTCCTTCTTCAGACATTCAGCCAGTGATTGCTCTCTGCC
TTCACGCACCGATCTTAGTGTTATTTTCAATCCTGTTGGCGATGACTTCT
TTAATCCCTTCAGCACTGGACCTATCCATCCATTTCCTTCTTTGCCTGCC
TCTGCTTCAAATGATTTTATAATCTCGGCTACAGTCTCCTTTGAGAAACA
CTCATCAATTATAGACTGCTTATTTAAGACACTTTGTCCATCAAGCTGAA
CATCCTCAGAGAACTCTTCAATTGCAGATTTGACTGCAATTTCATCACCA
GTGTTTAAGCCTATCAGACGCTTTTCTAGCTCGGGGCATTTCTCAGAAGG
GACAAAATGGGTAGCTAGCCCAGCTGCAACCAG
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