EY666459

Overview
NameEY666459
Unique NameEY666459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.725e-91
Identity = 164/242 (67.77%), Postives = 194/242 (80.17%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPK-GRDHFSLGK 724
            IF++M +EK RQFKG+ELIASENF  RAVMEALGSH TNKY+EGYPG+RYY G + +D++E LC +RALKAF LD   WGVNVQPYS + ANFAVYT LL P DRIMGLD PSGGHL+HGY T   KK+SA+SIFFES PY++    G IDY++LEE A+ ++PK++I G S+YPREWDY R R IADK GA LMCDMAH SGL+AA+ L SPFDYCD+VTSTTHK+LRGP+ G   F  GK
Sbjct:   17 IFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQT-DKKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRGK 256          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.254e-90
Identity = 156/232 (67.24%), Postives = 192/232 (82.76%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPK 697
            I+D+M KEKQRQF G+ELIASENF  RAVME++GS  TNKY+EG PGARYY GN+ +DQ+ENLC +RAL+ F+L+ + WGVNVQPYS ++ANFA +TGLL P DRIMGLD PSGGHL+HGY T   KK+SA SIFFES PY+VN +TGY+DY K+E  A  +RPK+LI G S+YPREWDY R R+IADK GA L+CDMAHISG++A K+  SPF +CD+VT+TTHK+LRGP+
Sbjct:   41 IYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQT-DKKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPR 270          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.572e-83
Identity = 151/233 (64.81%), Postives = 183/233 (78.54%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKG 700
            +FDIM+ EK+RQ +G+ELIASENF  +AVM+ALGS + NKYSEGYPGARYY GN++IDQ+E LC +RAL+ F LD   WGVNVQP S + ANFAVYT ++    RIMGLD P GGHL+HG+ TP  +KVSA S FF+S PYKV+P TG IDY+KLE+ AM +RPK +I G S Y R  DY RFR+IA K GA LM DMAHISGL+AA  + SPF+Y D+VT+TTHKSLRGP+G
Sbjct:   59 VFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRG 290          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.564e-82
Identity = 152/250 (60.80%), Postives = 187/250 (74.80%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKGRDHF---SLGKAKKPGK 742
            I DI+E EK RQ+KG+ELI SENF   +VM+A+GS +TNKYSEGYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + +NF VYT LL P DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  AVL+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP+G   F    L +  K GK
Sbjct:   63 IADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGK 311          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 7.266e-82
Identity = 151/233 (64.81%), Postives = 182/233 (78.11%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKG 700
            +F+IM+ EK RQ +G+ELIASENF  +AVM+ALGS + NKYSEGYPGARYY GN++IDQ+E LC +RAL+ F LD   WGVNVQ  S + ANFAVYT L+    RIMGLD P GGHL+HG+ TP  +KVSA S FF+S PYKV+ Q+G IDY+KLEE AM +RPK+LI G S Y R  DY RFR+IA K GA LM DMAHISGL+AA  + SPF+Y D+VT+TTHKSLRGP+G
Sbjct:   63 VFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTP-ARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRG 294          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.239e-81
Identity = 147/233 (63.09%), Postives = 181/233 (77.68%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKG 700
            I DI+E EK RQ+KG+ELI SENF   +VM+A+GS +TNKYSEGYPGARYY GN+YID  E LC +RAL+AF LD+  WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  A+L+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP+G
Sbjct:   63 IADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRG 294          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.619e-81
Identity = 151/250 (60.40%), Postives = 186/250 (74.40%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKGRDHF---SLGKAKKPGK 742
            I DI+E EK RQ+KG+ELI SENF   +VM+A+GS +TNKYSEGYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  A+++ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP+G   F    L +  K GK
Sbjct:   63 IADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGK 311          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.710e-81
Identity = 144/233 (61.80%), Postives = 182/233 (78.11%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKG 700
            I DI+E EK RQ+KG+ELI SENF   +VM+A+GS +TNKYSEGYPGARYY GN+YID  E LC +RAL+AF LD + WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY+++E+ A  +RPK+++ G S+Y R +DY R R++ +K  AV++ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP+G
Sbjct:   62 IADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRG 293          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.049e-80
Identity = 145/233 (62.23%), Postives = 181/233 (77.68%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRGPKG 700
            I DI+E EK RQ+KG+ELI SENF   +VM+A+GS +TNKYSEGYPGARYY GN+YID  E LC +RAL+AF LD   WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ +K  A+L+ DMAHISGL+AA  + SPFDY D+VT+TTHKSLRGP+G
Sbjct:   63 IADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRG 294          
BLAST of EY666459 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.337e-80
Identity = 146/230 (63.48%), Postives = 178/230 (77.39%), Query Frame = 2
Query:    2 IFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLRG 691
            ++DI++KE  RQ  G+ELIASENF  RAV+EALGS L NKYSEGYPG RYY G ++ID++E LC +RAL+A+ LD   WGVNVQPYS + ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES  YKVNP TGYIDY++LEE A  + PK++I G S Y R  DYGR R+IAD+ GA LM DMAHISGL+ A  + SPF++C +VT+TTHK+LRG
Sbjct:   33 VYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-DKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 261          
The following BLAST results are available for this feature:
BLAST of EY666459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC1_DICDI1.725e-9167.77Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC2_DICDI3.254e-9067.24Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_CAEEL6.572e-8364.81Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_PEA5.564e-8260.80Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR7.266e-8264.81Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYN_FLAPR1.239e-8163.09Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR1.619e-8160.40Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_ARATH4.710e-8161.80Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU1.049e-8062.23Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT2.337e-8063.48Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666459 ID=EY666459; Name=EY666459; organism=Citrus sinensis; type=EST; length=840bp
GATTTTTGATATCATGGAGAAGGAAAAACAACGCCAATTCAAGGGAATCG
AGTTAATAGCTTCAGAGAATTTCGTTTGTCGTGCTGTAATGGAGGCTCTT
GGCAGCCATTTAACAAACAAGTACTCAGAAGGATACCCTGGAGCTAGATA
TTATACAGGCAATCAGTACATAGATCAGATAGAAAATCTATGTTTTGAAC
GAGCGTTAAAAGCTTTTGATCTTGATAGCGATAATTGGGGAGTCAACGTT
CAGCCATATTCATGTACCTCTGCAAATTTCGCGGTCTATACGGGTCTTTT
GTTGCCTGGGGATAGAATTATGGGGTTAGATTCTCCTTCTGGAGGGCATT
TGAGTCACGGCTACCATACACCAGGAGGGAAGAAGGTTTCAGCTGCTTCA
ATATTCTTTGAGAGTTTTCCTTATAAAGTGAATCCGCAAACTGGCTATAT
TGATTACGAAAAGCTGGAGGAGAAGGCCATGGATTATAGACCCAAGATTT
TGATTTGTGGTGGGAGTTCATATCCCAGAGAGTGGGATTATGGGAGGTTT
AGGCAGATTGCAGATAAGTGTGGTGCAGTTTTGATGTGTGATATGGCTCA
TATTAGTGGGCTCATTGCTGCTAAAGAATTGGCCAGTCCATTTGATTATT
GTGATATCGTGACTTCAACAACTCACAAAAGTTTACGAGGTCCTAAGGGG
AGGGATCATTTTTCTTTAGGAAAGGCAAAAAAACCAGGGAAACCAAGGCA
TACCCCTCCATCCTGGGGAATGGTTGGATTAATTATGAATTTCCAAGAAA
AGGATAAACTTTTGCTGGTCCTTCCTTCACTACCAAGGGG
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