EY666456

Overview
NameEY666456
Unique NameEY666456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.663e-33
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 3
Query:  546 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVPMEXXXXXXP 815
            MNYFPDEVIEHVFDFVTS KDRNA+SLVCKSWYKI+R SRQ+VFIGNCY I+PER +R+ P L+SL LKGKPHF +F+LVP E      P
Sbjct:    1 MNYFPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCLKSLTLKGKPHFADFNLVPHEWGGFVLP 90          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.909e-31
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 3
Query:  546 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVPMEXXXXXXP 815
            MNYFPDEVIEHVFDFV S KDRN++SLVCKSW+KI+R SR+ VFIGNCY I+PER IR+ P L+SL LKGKPHF +F+LVP E      P
Sbjct:    1 MNYFPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCLKSLTLKGKPHFADFNLVPHEWGGFVHP 90          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  531 VKRKMMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVP 788
            +++++   FP+EV+EHVF F+   KDRN+VSLVCKSWY+I+R  R++VFIGNCY +SP   IR+ P + S+ LKGKPHF +F+LVP
Sbjct:    1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVP 86          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.122e-23
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  546 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVPMEXXXXXXP 815
            M YFP+EV+EH+F F+ +Q+DRN VSLVCK WY+I+R+SR+ VF+GNCY +   R   + P + +L +KGKPHF +F+LVP +      P
Sbjct:    1 MTYFPEEVVEHIFSFLPAQRDRNTVSLVCKVWYEIERLSRRGVFVGNCYAVRAGRVAARFPNVRALTVKGKPHFADFNLVPPDWGGYAGP 90          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.608e-22
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 3
Query:  555 FPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVP 788
            FP +V+EH+  F+ S +DRN+VSLVCKSW++ +R +R+RVF+GNCY +SP    R+ P + SL LKGKPHF +++LVP
Sbjct:    5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEMRSLTLKGKPHFADYNLVP 82          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.734e-19
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 3
Query:  546 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHF 767
            M +FP+EV+EH+  F+ S +DRNAVSLVC+ WY+++R+SR+ V + NCY   PER   + PGL SL++KG+P F
Sbjct:    1 MVFFPEEVVEHILGFLASHRDRNAVSLVCREWYRVERLSRRSVLVRNCYAARPERVHARFPGLRSLSVKGRPRF 74          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 3
Query:  561 DEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVP 788
            + V+E+V  F+TS+ DRNAVSLVC+SWY+++  +R  VFIGNCY +SP R I +   + SL LKGKP F +F+L+P
Sbjct:   56 ENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFKRVRSLVLKGKPRFADFNLMP 131          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  555 FPDEVIEHVFD----FVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVPMEXXXXXXP 815
            FPD V+E+V +    F+ S+ DRNA SLVCKSW++++ ++R  VFIGNCY +SP R  ++   + SL LKGKP F +F+L+P +      P
Sbjct:   50 FPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYALSPARLTQRFKRVRSLVLKGKPRFADFNLMPPDWGANFAP 140          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  558 PDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVP 788
            PDEV EH F F+ +  DR A +  C SW + +R SR+R+ + NCY  +P   + + P + +  +KGKPHF +F LVP
Sbjct:   21 PDEVWEHAFSFLPAAADRGAAAGACSSWLRAERRSRRRLAVANCYAAAPRDAVERFPSVRAAEVKGKPHFADFGLVP 97          
BLAST of EY666456 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  561 DEVIEHVFDFVTSQKDRNAVSLVCKSWYKIKRMSRQRVFIGNCYPISPERGIRKVPGLESLNLKGKPHFGEFHLVP 788
            D+VIE V  ++T  KDR++ SLVC+ W+KI   +R+ V +  CY  +P+R  R+ P L SL LKGKP    F+L+P
Sbjct:   18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93          
The following BLAST results are available for this feature:
BLAST of EY666456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AFB2_ARATH2.663e-3373.33Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
AFB3_ARATH1.909e-3170.00Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
TIR1_ARATH1.014e-2456.98Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidop... [more]
TIR1B_ORYSJ1.122e-2351.11Transport inhibitor response 1-like protein Os04g0... [more]
GRH1_ARATH3.608e-2255.13GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH... [more]
TIRC_ORYSJ3.734e-1952.70Transport inhibitor response 1-like protein Os11g0... [more]
FBX14_ARATH4.128e-1853.95F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
TIR1L_ARATH2.676e-1746.15Transport inhibitor response 1-like protein OS=Ara... [more]
TIR1A_ORYSJ9.517e-1542.86Transport inhibitor response 1-like protein Os05g0... [more]
COI1_ARATH3.616e-1446.05Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666456 ID=EY666456; Name=EY666456; organism=Citrus sinensis; type=EST; length=815bp
TTCTCTCTGTATAGTTTTATCATTTCATTAGATTTTCGATTTAGTTTTTG
TTAGTTTCTATTTACGGAAAATTTAGATTTTTTTTTCGAGATCTATGAAT
TTAATCTGTTTTTCAACGTTTTTTCATCGCTGTAATCATTTTGCAGATGA
TCACTGAATGAGAAAATAAGAAGATAAACAAATTTTCCTTCACTTTCTCT
CTAAAAAAAACCACGTTTTTTTTTTCCTCGCGAAAATTCGAGTTCTTTCT
CTTTCTCTCTGTTGCCTTTAGATCTTAATAATCTAAAGTAGTAAAGAGAG
GCGACACAATCTCAGTTGTCCTTGCACTCACATCATTCTGTCCGTACGTA
GTAGTTTTTAGATTTTCAGATCTGGTCTCATTATTAGATTTTCCAAATAA
TTTTAAGATATTCCCCAAAATTAGATCTGGGTTTAATTTGTTCTCTCTTA
AAAAGATAATTTTCTCGGGAAAGTTGGGTTTTTTCTGGGGAATTTTTTTT
TTTTGGGAAAGTTGAGGAGTAAGACTGAATGTTAAGCGAAAGATGATGAA
TTATTTTCCAGATGAGGTAATAGAGCACGTGTTCGATTTCGTGACATCGC
AGAAAGACAGAAACGCCGTATCGTTGGTGTGCAAATCATGGTACAAAATC
AAACGAATGAGCAGACAAAGGGTGTTCATCGGGAACTGCTACCCGATCAG
CCCAGAAAGGGGGATCCGGAAGGTTCCGGGGCTGGAGTCCTTGAATTTAA
AGGGGAAACCCCATTTTGGGGAATTTCACTTGGTTCCGATGGAAGGGGGG
GGGGGGGGGGGACCC
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